We realease PDB/RDF, chem_comp/RDF, and BIRD/RDF, respectively and rsync services for each.

GRAPH URIs of SPARQL endpoint have been updated for BMRB/RDF, PDB/RDF, chem_comp/RDF, PRD/RDF, and FAM/RDF, respectively.

We are now distributing BLAST output files of BMRB entries that have been queried to the AlphaFold Protein Structure Database and those for PDB entries.

We updated conversion tools (v1.35.0), which will change namespace URIs of BMRB/XML and BMBR/RDF.

We added chemical shift validation reports of all BMRB entries in JSON format. The schema is the same as for the combined NMR restraints report file.

We have changed our group name to BMRBj (Biologinal Magnetic Data Bank Japan) formerlly known as PDBj-BMRB. We look forward to working with you.

We added a JSON Schema for the combined NMR restraints report file, which contains restraint statistics and diagnostic information.

We added an archive of combined NMR restraints (CS+MR) associated with PDB entries in both NMR-STAR and NEF formats. Polymer sequence, atom nomenclature and restraint data have been checked with the coordinates. See also restraint statistics and diagnostic information of the combined NMR restraints reported in each JSON file.

We have changed resource names for alternative wwPDB validation reports.

We made a presentation about PDBj-BMRB activities at The day of TOGO 2019.

We updated conversion tools (v1.34.0) based on NMR-STAR v3.2.1.18 Dictionary.

We updated conversion tools (v1.33.0) based on NMR-STAR v3.2.1.15 Dictionary.

mmCIF versions of wwPDB validation reports, mmCIF-validation and mmCIF-validation-alt, are available via either HTTP or rsync protcol.

We updated conversion tools (v1.32.0) based on NMR-STAR v3.2.1.12 Dictionary.

RDB Snapshot is based on PostgreSQL 11's tool chain.

We updated conversion tools (v1.31.0) based on NMR-STAR v3.2.1.9 Dictionary includes new remediation.

We made a presentation about PDBj-BMRB activities and alternative wwPDB validation reports at The day of TOGO 2018.

We made PDBj luncheon seminar about alternative wwPDB validation reports at The 56st Annual Meeting of the Biophysical Society.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.2.1.9 Dictionary.

We updated conversion tools (v1.30.0) based on NMR-STAR v3.2.1.9 Dictionary.

We added two new graphs in the SPARQL endpoint: wwPDB/RDF-validation-alt and PDBj-SIFTS.

We added PostgreSQL dump file for PDBML-noatom and PDBML-validation-alt in rsync download service.

Another light versions of wwPDB validation reports by omitting PDBML content, PDBML-validation-alt and wwPDB/RDF-validation-alt, are available via either HTTP or rsync protcol.

We updated conversion tools (v1.29.0), which changed namespace URI from http://bmrbpub.protein.osaka-u.ac.jp/schema/mmcif_nmr-star.xsd to https://bmrbpub.pdbj.org/schema/mmcif_nmr-star.xsd.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.2.1.5 Dictionary.

We updated conversion tools (v1.28.0) based on NMR-STAR v3.2.1.5 Dictionary.

We updated conversion tools (v1.27.0) based on NMR-STAR v3.2.1.2 Dictionary.

Alternative wwPDB validation reports, PDBML-validation and wwPDB/RDF-validation, are available via either HTTP or rsync protcol.

We updated conversion tools (v1.26.0) based on NMR-STAR v3.2.0.15 Dictionary under Apache Licence V2.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.2.0.15 Dictionary.

Refreshed BMRB/JSON archive by removing JSON arrays whose all objects are neither null or empty.

Refreshed nmrML documents (from 1.0.rc1 to 1.0.0) are available via either HTTP or rsync protcol.

We have released BMSxNmrML v1.1.0 that fixes problems with current BMRB/XML.

BMRB RDB Snapshot is based on PostgreSQL 10's tool chain.

We updated conversion tools (v1.25.0) based on NMR-STAR v3.2.0.11 Dictionary.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.2.0.11 Dictionary.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.2.0.9 Dictionary.

We updated conversion tools (v1.24.0) based on NMR-STAR v3.2.0.9 Dictionary.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.2.0.7 Dictionary.

We updated conversion tools (v1.23.0) based on NMR-STAR v3.2.0.7 Dictionary.

We have released BMSxNmrML, an nmrML converter for BMRB metabolomics entries based on BMRB/XML. nmrML is an open mark-up language for NMR data (FID). Generated nmrML documents are available via either HTTP or rsync protcol.

BMRB/XML, BMRB/RDF, and BMRB/JSON archives are based on NMR-STAR v3.1.2.6 Dictionary.

We updated conversion tools (v1.22.0) based on NMR-STAR v3.1.2.6 Dictionary.

BMRB/JSON Schema is available.

We have added BMRB/JSON archive, which is converted from BMRB/XML like PDBx/mmJSON.

We updated conversion tools (v1.21.0). Released for generation of BMRB/JSON archive.

We made a presentation at The 5th Informatics in Biology, Medicine and Pharmacology. Thank you for your attention.

We added PostgreSQL dump file for BMRB entries in rsync download service.

We made a presentation at The 27th International Conference on Magnetic Resonance in Biological Systems. Thank you for your attention.

We added MolProbity structure validation reports for all PDB entries generated by BMRB, Wisconsin-Madison. They are identical resource available at BMRB mirror sites.

We are now distributing BLAST seuquence alignment results queried by EMDB sequqnces.

We are now distributing FASTA sequence files, which were carefully extracted from EMDB entities and BLAST database for EMDB protein/nucleotide sequences (emdbaa.tar.gz or emdbnt.tar.gz) as well.

We have updated index page adding SANS as an NMR-STAR parser library, detailed descriptions about information contents and a relating image.

We replaced SPARQL based simple search service by integrated search service of PDBj-BMRB portal site

We updated conversion tools (v1.20.0). Released for re-integration of BMRB+PDB archive, performance improvement and experimental support for full-text search via Sphinx.

We made a presentation at The 2015 Annual Conference of the Japanease Society for Bioinformatics. Thank you for your attention.

We have added a page for testing various SPARQL queries.

We updated conversion tools (v1.19.0). Released for enhanced agreements with Linked Data. Exactly, almost all RDF data properties have direct links to counterparts of NMR-STAR Dictionary's items and counterparts in PDBx OWL document by appending rdfs:seeAlso or owl:equivalentProperty properties.

We have added external RDF links pointing to PubChem SID (chem_comp.pubchem_code, chem_comp_db_link.accession_code) and CID (chem_comp_db_link.accession_code) in BMRB/RDF dataset.

We are now distributing FASTA sequence files, which were carefully extracted from PDB entities and BLAST database for PDB protein/nucleotide sequences (pdbaa.tar.gz or pdbnt.tar.gz) as well.

We are now distributing BLAST seuquence alignment results queried by PDB sequqnces and UniProtKB sequences. We added Archive page, which summarized available contents produced by PDBj-BMRB.

We are now distributing validation reports about completeness of assigned chemical shifts. Excluded atoms in calculation of the completeness are listed here.
We updated conversion tools (v1.18.0). Released for supporting the validation reports about completeness.

We updated conversion tools (v1.17.0). Released for recent Metabolomics update.

We have added following items expressing PDBx compatible author's name: entry_author.pdbx_name, entry_editor.pdbx_name and citation_author.pdbx_name, respectively.

We are now distributing BLAST output files queried to BMRB protein (bmrbaa) database and BLAST output files queried to BMRB nucleotide database (bmrbnt).

We are now distributing FASTA sequence files, which were carefully extracted from entities of NMR-STAR data, BLAST output files queried to UniProtKB (swissprot) database and BLAST output files queried to PDB nucleotide database (pdbnt).

We are now distributing BLAST output files queried to PDB protein database (pdbaa) using the condition that sequence coverage is greater than 80%.

We are now distributing BLAST database for BMRB protein/nucleotide sequences (bmrbaa.tar.gz or bmrbnt.tar.gz).

We are now distributing structural annotation files using Protein Blocks for matched NMR structures and matched X-ray structures.

We updated conversion tools (v1.16.0), which remediate entity.polymer_seq_one_letter_code, entity.polymer_seq_one_letter_code_can and entity.number_of_monomers.

We added N-Triples format as BMRB/RDF data collection.

We updated conversion tools (v1.15.0), which support making search index via Apache Lucene and N-Triples in addtion with RDF/XML.

We made a presentation at The 53rd Annual Meeting of the NMR Society of Japan. Thank you for your attention.

We updated conversion tools (v1.14.0), which remediate information about formula weight using RCSB Ligand Expo database (entity.formula_weight and chem_comp.formula_weight).

We updated conversion tools (v1.13.0), which revive primary PDB reference (entry.assigned_pdb_id and entry.assigned_pdb_deposition_code).

We updated conversion tools (v1.12.0), which include RDB cloner tools.

We updated conversion tools (v1.11.1).

We updated conversion tools (v1.11.0), which support LACS validation reports.

We updated conversion tools (v1.10.0) based on NMR-STAR v3.1.1.65 Dictionary.

We updated conversion tools (v1.9.4).

XQuery REST service is fully functionalized.

We updated conversion tools (v1.9.3).

We updated conversion tools (v1.9.2).

We updated conversion tools (v1.9.1).

We updated conversion tools (v1.9.0).

We will make a presentation at The 36th Annual Meeting of the Molecular Biology Society of Japan.

We updated conversion tools (v1.8.0).

We updated data set and conversion tools (v1.7.0) based on NMR-STAR v3.1.1.53 Dictionary.

SPARQL endpoint is fully functionalized.

We made a presentation about BMRB/XML and BMRB/RDF at The 51st Annual Meeting of the Biophysical Society.

Initial release date.