wwPDB validation report of PDB entry 6ZBU

Nuclear receptor corepressor 1,B-cell lymphoma 6 protein

N-CoR1,BCL-6,B-cell lymphoma 5 protein,BCL-5,Protein LAZ-3,Zinc finger and BTB domain-containing protein 27,Zinc finger protein 51

Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with the NcoR1 BBD1 corepressor peptide

(chain 'A' and (resid -4 through 1 or resid 6 through 30 or resid 32 through 92 or resid 95 through 124))

(chain 'B' and (resid -4 through 1 or resid 6 through 30 or resid 32 through 92 or resid 95 through 124))

(chain 'E' and (resid -4 through 1 or resid 6 through 30 or resid 32 through 92 or resid 95 through 124))

(chain 'F' and (resid -4 through 1 or resid 6 through 30 or resid 32 through 92 or resid 95 through 124))

(chain 'I' and (resid -4 through 1 or resid 6 through 30 or resid 32 through 92 or resid 95 through 124))

(chain 'J' and (resid -4 through 1 or resid 6 through 30 or resid 32 through 92 or resid 95 through 124))

The analyses of the Patterson function reveals a significant off-origin peak that is 83.76 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 1.9946e-07. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

20191225.v01 (using entries in the PDB archive December 25th 2019)

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures