wwPDB validation report of PDB entry 7YLO

Hydrogens have been added in their riding positions.

The model represents an ordered domain of a partially disordered crystal. Reflections L=2N+1 were severely affected by crystal disorder and could not be measured. Reflections L=2N were not affected by crystal disorder and were used for structure solution and refinement. Scaling and merging was done in point group 6 2 2, c=42.0A. Refinement was conducted against 50% complete P 3 2 1 data set, c=84A, see associated manuscript for details.

Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation

Global NCS restraints between domains: 1 2

The analyses of the Patterson function reveals a significant off-origin peak that is 100.00 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 0.0000e+00. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)