wwPDB validation report of PDB entry 6XA9

nsp3,PL2-PRO,Papain-like protease,Papain-like proteinase,PL-PRO

Interferon-induced 15 kDa protein,Interferon-induced 17 kDa protein,IP17,Ubiquitin cross-reactive protein,hUCRP

Papain-like protease (E.C.3.4.19.12,3.4.22.-), ISG15 CTD-propargylamide
SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide

(chain 'A' and ((resid 5 through 7 and (name N or name CA or name C or name O or name CB )) or resid 8 through 19 or (resid 20 through 21 and (name N or name CA or name C or name O or name CB )) or resid 22 through 23 or (resid 24 through 26 and (name N or name CA or name C or name O or name CB )) or resid 27 through 28 or (resid 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 35 or (resid 36 and (name N or name CA or name C or name O or name CB )) or resid 37 through 42 or (resid 43 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 or (resid 47 and (name N or name CA or name C or name O or name CB )) or resid 48 or (resid 49 and (name N or name CA or name C or name O or name CB )) or resid 50 or (resid 53 and (name N or name CA or name C or name O or name CB )) or resid 54 through 57 or (resid 58 and (name N or name CA or name C or name O or name CB )) or resid 59 through 84 or (resid 85 through 86 and (name N or name CA or name C or name O or name CB )) or resid 87 through 91 or (resid 92 and (name N or name CA or name C or name O or name CB )) or resid 93 through 142 or (resid 143 through 145 and (name N or name CA or name C or name O or name CB )) or resid 146 through 178 or (resid 179 and (name N or name CA or name C or name O or name CB )) or resid 180 through 184 or (resid 185 through 188 and (name N or name CA or name C or name O or name CB )) or resid 189 through 216 or (resid 217 through 218 and (name N or name CA or name C or name O or name CB )) or resid 219 or (resid 220 through 222 and (name N or name CA or name C or name O or name CB )) or resid 223 through 230 or (resid 231 and (name N or name CA or name C or name O or name CB )) or resid 232 through 233 or (resid 234 and (name N or name CA or name C or name O or name CB )) or resid 235 or (resid 236 and (name N or name CA or name C or name O or name CB )) or resid 237 through 251 or (resid 252 and (name N or name CA or name C or name O or name CB )) or resid 253 through 267 or (resid 269 and (name N or name CA or name C or name O or name CB )) or resid 270 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 through 294 or (resid 295 and (name N or name CA or name C or name O or name CB )) or resid 296 through 313 or resid 503 through 504))

(chain 'C' and ((resid 5 through 7 and (name N or name CA or name C or name O or name CB )) or resid 8 through 19 or (resid 20 through 21 and (name N or name CA or name C or name O or name CB )) or resid 22 through 23 or (resid 24 through 26 and (name N or name CA or name C or name O or name CB )) or resid 27 through 28 or (resid 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 35 or (resid 36 and (name N or name CA or name C or name O or name CB )) or resid 37 through 42 or (resid 43 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 or (resid 47 and (name N or name CA or name C or name O or name CB )) or resid 48 or (resid 49 and (name N or name CA or name C or name O or name CB )) or resid 50 or (resid 53 and (name N or name CA or name C or name O or name CB )) or resid 54 through 57 or (resid 58 and (name N or name CA or name C or name O or name CB )) or resid 59 through 64 or (resid 65 and (name N or name CA or name C or name O or name CB )) or resid 66 through 84 or (resid 85 through 86 and (name N or name CA or name C or name O or name CB )) or resid 87 through 91 or (resid 92 and (name N or name CA or name C or name O or name CB )) or resid 93 through 178 or (resid 179 and (name N or name CA or name C or name O or name CB )) or resid 180 through 184 or (resid 185 through 188 and (name N or name CA or name C or name O or name CB )) or resid 189 through 233 or (resid 234 and (name N or name CA or name C or name O or name CB )) or resid 235 or (resid 236 and (name N or name CA or name C or name O or name CB )) or resid 237 through 267 or (resid 269 and (name N or name CA or name C or name O or name CB )) or resid 270 through 313 or resid 503 through 504))

(chain 'E' and (resid 5 through 142 or (resid 143 through 145 and (name N or name CA or name C or name O or name CB )) or resid 146 through 194 or (resid 195 and (name N or name CA or name C or name O or name CB )) or resid 196 through 216 or (resid 217 through 218 and (name N or name CA or name C or name O or name CB )) or resid 219 or (resid 220 through 222 and (name N or name CA or name C or name O or name CB )) or resid 223 through 230 or (resid 231 and (name N or name CA or name C or name O or name CB )) or resid 232 through 267 or resid 269 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 through 294 or (resid 295 and (name N or name CA or name C or name O or name CB )) or resid 296 through 313 or resid 502 through 503))

The largest off-origin peak in the Patterson function is 3.36% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation
geometric validation package for ligand chemistry in protein x-ray structures
20191225.v01 (using entries in the PDB archive December 25th 2019)