wwPDB validation report of PDB entry 3W8E

The same protein complexed with NAD+ and methylmalonate.

The same protein complexed with NAD+ and malonate.

The same protein complexed with NAD+ and D-3-hydroxybutyrate.

The same protein complexed with NAD+ and acetate.

HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS

D-3-hydroxybutyrate dehydrogenase (E.C.1.1.1.30)
Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and a substrate D-3-hydroxybutyrate

The largest off-origin peak in the Patterson function is 16.34% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)