wwPDB validation report of PDB entry 2V5S

N-TERMINAL FOUR DOMAINS (D1, D2, D3 AND D4), RESIDUES 36-423

DOWN SYNDROME CELL ADHESION MOLECULE DSCAM

STRUCTURAL BASIS FOR DSCAM ISOFORM SPECIFICITY

THE CONFLICTS GIVEN IN THE SEQADV RECORDS BELOW ARE AS A RESULT OF A SPLICE VARIANT FORM OF THE PROTEIN WHERE EXON 4 COVERING RESIDUES 102 TO 156 CONSISTS OF ISOFORM 1 AND EXON 6 COVERING RESIDUES 205 TO 245 CONSISTS OF ISOFORM 34.

HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.

The analyses of the Patterson function reveals a significant off-origin peak that is 48.25 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 8.8332e-05. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)