wwPDB validation report of PDB entry 1V0V

UNINHIBITED PHOSPHOLIPASE D FROM STREPTOMYCES SP. STRAIN PMF.

PHOSPHOLIPASE D FROM STREPTOMYCES SP. STRAIN PMF SOAKED WITH THE PRODUCT GLYCEROPHOSPHATE.

TUNGSTATE INHIBITED PHOSPHOLIPASE D FROM STREPTOMYCES SP. STRAIN

PHOSPHOLIPASE D FROM STREPTOMYCES SP. STRAIN PMF SOAKED WITH THE SUBSTRATE DIBUTYRYLPHOSPHATIDYLCHOLINE.

THIS DATASET DESCRIBES AN 8 DAY SUBSTRATE SOAK USING 2MM DIBUTYRYLPHOSPHATIDYLCHOLINE. A PHOSPHATE IS FOUND TO BE COVALENTLY LINKED TO AN ACTIVE SITE HISTIDINE, SUGGESTING THAT THE CATALYTIC REACTION CAN PROCEED BEYOND THAT OF PRODUCT FORMATION, AND THAT, IN FACT THE PRODUCT CAN REENTER THE ACTIVE SITE TO BE FURTHER PROCESSED.
THIS SEQUENCE HAS NOT BEEN DEPOSITED TO UNIPROT AT THE TIME OF STRUCTURE DEPOSITION.

HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THIS ENTRY CONTAINS ATOMS THAT HAVE BEEN MODELED WITH AN OCCUPANCY OF 0.00.

The largest off-origin peak in the Patterson function is 6.13% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)