wwPDB validation report of PDB entry 5TH5

CDG synthase,Queuosine biosynthesis protein QueE

5TGS is the same protein with methionine bound

7-carboxy-7-deazaguanine synthase (E.C.4.3.99.3)
Crystal Structure of QueE from Bacillus subtilis with 6-carboxypterin-5'-deoxyadenosyl ester bound

(segid A and resid 3:243) and (name O or name C or name CA or name N)

(segid B and resid 3:243) and (name O or name C or name CA or name N)

(segid C and resid 3:243) and (name O or name C or name CA or name N)

(segid D and resid 3:243) and (name O or name C or name CA or name N)

(segid A and not (name O or name C or name CA or name N)) and not (resid 53 or resid 54 or resid 56 or resid 61 or resid 69 or resid 73 or resid 102 or resid 104 or resid 140 or resid 152 or resid 178 or resid 240)

(segid B and not (name O or name C or name CA or name N)) and not (resid 3 or resid 53 or resid 56 or resid 61 or resid 69 or resid 73 or resid 102 or resid 104 or resid 152:153 or resid 155:156 or resid 168 or resid 171 or resid 178 or resid 240)

(segid C and not (name O or name C or name CA or name N)) and not (resid 3 or resid 42 or resid 53 or resid 56 or resid 61 or resid 69 or resid 73 or resid 102 or resid 104 or resid 152:153 or resid 167 or resid 178 or resid 200)

(segid D and not (name O or name C or name CA or name N)) and not (resid 3 or resid 16 or resid 53 or resid 56 or resid 61 or resid 69 or resid 73 or resid 102 or resid 140 or resid 152:153 or resid 168 or resid 178 or resid 195 or resid 197 or resid 240)

The largest off-origin peak in the Patterson function is 5.46% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)