wwPDB validation report of PDB entry 1PTO

SACCHARIDE CONTAINS TERMINAL N-ACETYLNEURAMINIC ACID (ALPHA 2,6) GALACTOSE

N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose

THE STRUCTURE OF A PERTUSSIS TOXIN-SUGAR COMPLEX AS A MODEL FOR RECEPTOR BINDING

MTRIX
THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW
DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE
VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE
MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL
YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED
SECOND.

APPLIED TO TRANSFORMED TO
MTRIX RESIDUES RESIDUES RMSD
M1 A 2 .. A 235 G 2 .. G 235 0.916
M1 B 4 .. B 199 H 4 .. H 199 0.659
M1 C 4 .. C 199 I 4 .. I 199 0.916
M1 D 1 .. D 110 J 1 .. J 110 0.554
M1 E 1 .. E 110 K 1 .. K 110 1.009
M1 F 2 .. F 99 L 2 .. L 99 0.955

20191225.v01 (using entries in the PDB archive December 25th 2019)
geometric validation package for ligand chemistry in protein x-ray structures