wwPDB validation report of PDB entry 6PMD

ATP-dependent Clp protease proteolytic subunit

SHV-WFP-SER-PRO-YCP-ALA-MP8 Acyldepsipeptide

HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
ATP-dependent Clp protease proteolytic subunit (E.C.3.4.21.92), Acyldepsipeptide
Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide
binding site for Ligand residues MP8 H 7 through PRO H 4 bound to SER H 3
binding site for Ligand residues MP8 J 7 through PRO J 4 bound to SER J 3
binding site for Ligand residues MP8 O 7 through PRO O 4 bound to SER O 3
binding site for Ligand residues MP8 P 7 through PRO P 4 bound to SER P 3
binding site for Ligand residues MP8 Q 7 through PRO Q 4 bound to SER Q 3
binding site for Ligand residues MP8 R 7 through PRO R 4 bound to SER R 3
binding site for Ligand residues MP8 U 7 through PRO U 4 bound to SER U 3
binding site for Ligand residues MP8 V 7 through PRO V 4 bound to SER V 3
binding site for Ligand residues MP8 X 7 through PRO X 4 bound to SER X 3
binding site for Ligand residues MP8 Y 7 through PRO Y 4 bound to SER Y 3
binding site for Ligand residues MP8 Z 7 through PRO Z 4 bound to SER Z 3
binding site for residues SHV H 1 and WFP H 2
binding site for Di-peptide WFP H 2 and SER H 3
binding site for residues SHV J 1 and WFP J 2
binding site for Di-peptide WFP J 2 and SER J 3
binding site for residues SHV O 1 and WFP O 2
binding site for Di-peptide WFP O 2 and SER O 3
binding site for residues SHV P 1 and WFP P 2
binding site for Di-peptide WFP P 2 and SER P 3
binding site for residues SHV Q 1 and WFP Q 2
binding site for Di-peptide WFP Q 2 and SER Q 3
binding site for residues SHV R 1 and WFP R 2
binding site for Di-peptide WFP R 2 and SER R 3
binding site for residues SHV U 1 and WFP U 2
binding site for Di-peptide WFP U 2 and SER U 3
binding site for residues SHV V 1 and WFP V 2
binding site for Di-peptide WFP V 2 and SER V 3
binding site for residues SHV X 1 and WFP X 2
binding site for Di-peptide WFP X 2 and SER X 3
binding site for residues SHV Y 1 and WFP Y 2
binding site for Di-peptide WFP Y 2 and SER Y 3
binding site for residues SHV Z 1 and WFP Z 2
binding site for Di-peptide WFP Z 2 and SER Z 3
The largest off-origin peak in the Patterson function is 4.41% of the height of the origin peak. No significant pseudotranslation is detected.
structure factor analysis and validation
geometric validation package for ligand chemistry in protein x-ray structures
20191225.v01 (using entries in the PDB archive December 25th 2019)