wwPDB validation report of PDB entry 3PD5

SEQUENCE OF THE PROTEIN USED IN THIS STUDY WAS THE FRAGMENT OF UNP RESIDUES 1-183 OF DATABASE Q9UZ14 (SYT_PYRAB). BUT THE C-TERMINAL PROBABLY HAVE BEEN CLEAVED BEFORE CRYSTALLIZING.

Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with an analog of threonyl-adenylate

The largest off-origin peak in the Patterson function is 7.27% of the height of the origin peak. No significant pseudotranslation is detected.

20191225.v01 (using entries in the PDB archive December 25th 2019)

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures