wwPDB validation report of PDB entry 3L6Y

E-cadherin juxtamembrane domain core region

p120 catenin, p120(ctn), Cadherin-associated Src substrate, CAS, p120(cas)

THE SEQUENCE OF THIS ENTRY MATCHES THE SEQUENCE OF ISOFORM 1A WITH UNIPROT IDENTIFIER O60716-5. RESIDUES 626-631 (EXON C) OF O60716 ARE NOT PART OF ISOFORM 1A.

Crystal structure of p120 catenin in complex with E-cadherin

The analyses of the Patterson function reveals a significant off-origin peak that is 23.32 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 4.7698e-03. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

structure factor analysis and validation
geometric validation package for ligand chemistry in protein x-ray structures
20191225.v01 (using entries in the PDB archive December 25th 2019)