wwPDB validation report of PDB entry 7KNZ

4-hydroxy-tetrahydrodipicolinate synthase

(2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid

Dihydrodipicolinate synthase (DHDPS) from C.jejuni, E88A mutant with pyruvate bound in the active site and R,R-bislysine at the allosteric site

(chain A and (resid 3 through 112 or (resid 113 and (name N or name CA or name C or name O or name CB or name CG )) or resid 114 through 234 or (resid 235 and (name N or name CA or name C or name O or name CB or name CG )) or resid 236 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 or (resid 294 and (name N or name CA or name C or name O or name CB )) or resid 295 through 298))

(chain B and (resid 3 through 17 or (resid 18 and (name N or name CA or name C or name O or name CB )) or resid 19 through 20 or (resid 21 and (name N or name CA or name C or name O or name CB or name CG )) or resid 22 through 31 or (resid 32 and (name N or name CA or name C or name O or name CB )) or resid 33 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 96 or (resid 97 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 98 through 234 or (resid 235 and (name N or name CA or name C or name O or name CB or name CG )) or resid 236 through 279 or (resid 280 and (name N or name CA or name C or name O or name CB or name CG )) or resid 281 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 through 298))

(chain C and (resid 3 through 20 or (resid 21 and (name N or name CA or name C or name O or name CB or name CG )) or resid 22 through 31 or (resid 32 and (name N or name CA or name C or name O or name CB )) or resid 33 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 96 or (resid 97 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 98 through 112 or (resid 113 and (name N or name CA or name C or name O or name CB or name CG )) or resid 114 through 234 or (resid 235 and (name N or name CA or name C or name O or name CB or name CG )) or resid 236 through 279 or (resid 280 and (name N or name CA or name C or name O or name CB or name CG )) or resid 281 through 293 or (resid 294 and (name N or name CA or name C or name O or name CB )) or resid 295 through 298))

(chain D and (resid 3 through 17 or (resid 18 and (name N or name CA or name C or name O or name CB )) or resid 19 through 20 or (resid 21 and (name N or name CA or name C or name O or name CB or name CG )) or resid 22 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 96 or (resid 97 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 98 through 112 or (resid 113 and (name N or name CA or name C or name O or name CB or name CG )) or resid 114 through 234 or (resid 235 and (name N or name CA or name C or name O or name CB or name CG )) or resid 236 through 279 or (resid 280 and (name N or name CA or name C or name O or name CB or name CG )) or resid 281 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 or (resid 294 and (name N or name CA or name C or name O or name CB )) or resid 295 through 298))

(chain E and (resid 3 through 17 or (resid 18 and (name N or name CA or name C or name O or name CB )) or resid 19 through 20 or (resid 21 and (name N or name CA or name C or name O or name CB or name CG )) or resid 22 through 31 or (resid 32 and (name N or name CA or name C or name O or name CB )) or resid 33 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 96 or (resid 97 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 98 through 112 or (resid 113 and (name N or name CA or name C or name O or name CB or name CG )) or resid 114 through 234 or (resid 235 and (name N or name CA or name C or name O or name CB or name CG )) or resid 236 through 279 or (resid 280 and (name N or name CA or name C or name O or name CB or name CG )) or resid 281 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 or (resid 294 and (name N or name CA or name C or name O or name CB )) or resid 295 through 298))

(chain F and (resid 3 through 20 or (resid 21 and (name N or name CA or name C or name O or name CB or name CG )) or resid 22 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 96 or (resid 97 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 98 through 112 or (resid 113 and (name N or name CA or name C or name O or name CB or name CG )) or resid 114 through 279 or (resid 280 and (name N or name CA or name C or name O or name CB or name CG )) or resid 281 through 291 or (resid 292 and (name N or name CA or name C or name O or name CB )) or resid 293 or (resid 294 and (name N or name CA or name C or name O or name CB )) or resid 295 through 298))

The largest off-origin peak in the Patterson function is 2.56% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation
geometric validation package for ligand chemistry in protein x-ray structures
20191225.v01 (using entries in the PDB archive December 25th 2019)