wwPDB validation report of PDB entry 3KE1

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

structure with pyrimidine-containing fragment FOL 8395

structure with 5'-deoxy-5'-iodocytosine D000161819

HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (E.C.4.6.1.12)
Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei in complex with a fragment-nucleoside fusion D000161829

The largest off-origin peak in the Patterson function is 5.98% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)