wwPDB validation report of PDB entry 7JRE

Crystal structure of EV-D68 2A protease C107A mutant

(chain "A" and ((resid 4 and (name N or name CA or name C or name O or name CB or name CG )) or resid 5 through 8 or (resid 9 and (name N or name CA or name C or name O or name CB )) or resid 10 through 12 or (resid 13 and (name N or name CA or name C or name O or name CB )) or resid 14 or (resid 15 and (name N or name CA or name C or name O or name CB )) or resid 16 or (resid 17 and (name N or name CA or name C or name O or name CB )) or resid 18 or (resid 19 and (name N or name CA or name C or name O or name CB )) or (resid 20 and (name N or name CA or name C or name O )) or (resid 21 and (name N or name CA or name C or name O or name CB )) or (resid 22 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 23 and (name N or name CA or name C or name O or name CB )) or resid 24 or (resid 25 through 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 33 or (resid 34 and (name N or name CA or name C or name O or name CB )) or resid 35 through 36 or (resid 37 and (name N or name CA or name C or name O or name CB )) or (resid 38 and (name N or name CA or name C or name O or name CB or name CG )) or resid 39 or (resid 40 and (name N or name CA or name C or name O or name CB )) or resid 41 or (resid 42 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 or (resid 47 and (name N or name CA or name C or name O or name CB )) or resid 48 through 49 or (resid 50 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 51 through 52 and (name N or name CA or name C or name O or name CB )) or resid 53 or (resid 54 and (name N or name CA or name C or name O or name CB or name CG or name CD or name CE )) or resid 55 through 56 or (resid 57 and (name N or name CA or name C or name O or name CB )) or resid 58 or (resid 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 66 or (resid 67 and (name N or name CA or name C or name O or name CB )) or resid 68 through 70 or (resid 71 and (name N or name CA or name C or name O or name CB or name CG1)) or resid 72 through 77 or (resid 78 and (name N or name CA or name C or name O or name CB )) or resid 79 or (resid 80 and (name N or name CA or name C or name O or name CB )) or resid 81 or (resid 82 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or (resid 83 and (name N or name CA or name C or name O or name CB )) or (resid 84 and (name N or name CA or name C or name O or name CB or name CG )) or (resid 85 through 87 and (name N or name CA or name C or name O or name CB )) or resid 88 through 89 or (resid 90 through 91 and (name N or name CA or name C or name O or name CB )) or resid 92 through 94 or (resid 95 and (name N or name CA or name C or name O or name CB )) or resid 96 or (resid 97 through 99 and (name N or name CA or name C or name O or name CB )) or resid 100 through 102 or (resid 103 through 104 and (name N or name CA or name C or name O or name CB )) or resid 105 through 106 or (resid 107 through 109 and (name N or name CA or name C or name O )) or resid 110 through 120 or (resid 121 and (name N or name CA or name C or name O or name CB or name CG or name CD2)) or (resid 122 through 123 and (name N or name CA or name C or name O or name CB )) or resid 124 through 127 or (resid 128 through 130 and (name N or name CA or name C or name O or name CB )) or resid 131 through 137 or (resid 138 and (name N or name CA or name C or name O or name CB or name CG or name CD1)) or resid 139 or resid 201))

(chain "B" and (resid 4 through 12 or (resid 13 and (name N or name CA or name C or name O or name CB )) or resid 14 through 18 or (resid 19 and (name N or name CA or name C or name O or name CB )) or (resid 20 and (name N or name CA or name C or name O )) or (resid 21 and (name N or name CA or name C or name O or name CB )) or (resid 22 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 23 and (name N or name CA or name C or name O or name CB )) or resid 24 through 25 or (resid 26 through 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 33 or (resid 34 and (name N or name CA or name C or name O or name CB )) or resid 35 through 37 or (resid 38 and (name N or name CA or name C or name O or name CB or name CG )) or resid 39 through 41 or (resid 42 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 or (resid 47 and (name N or name CA or name C or name O or name CB )) or resid 48 or (resid 49 and (name N or name CA or name C or name O or name CB or name CG or name CD or name OE1)) or (resid 50 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 51 through 52 and (name N or name CA or name C or name O or name CB )) or resid 53 or (resid 54 and (name N or name CA or name C or name O or name CB or name CG or name CD or name CE )) or resid 55 through 56 or (resid 57 and (name N or name CA or name C or name O or name CB )) or resid 58 or (resid 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 62 or (resid 63 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 64 through 66 or (resid 67 and (name N or name CA or name C or name O or name CB )) or resid 68 through 70 or (resid 71 and (name N or name CA or name C or name O or name CB or name CG1)) or resid 72 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 77 or (resid 78 and (name N or name CA or name C or name O or name CB )) or resid 79 or (resid 80 and (name N or name CA or name C or name O or name CB )) or resid 81 through 85 or (resid 86 through 87 and (name N or name CA or name C or name O or name CB )) or resid 88 through 90 or (resid 91 and (name N or name CA or name C or name O or name CB )) or resid 92 through 94 or (resid 95 and (name N or name CA or name C or name O or name CB )) or resid 96 or (resid 97 through 99 and (name N or name CA or name C or name O or name CB )) or resid 100 through 102 or (resid 103 through 104 and (name N or name CA or name C or name O or name CB )) or resid 105 through 106 or (resid 107 through 109 and (name N or name CA or name C or name O )) or resid 110 through 120 or (resid 121 and (name N or name CA or name C or name O or name CB or name CG or name CD2)) or (resid 122 through 123 and (name N or name CA or name C or name O or name CB )) or resid 124 through 127 or (resid 128 through 130 and (name N or name CA or name C or name O or name CB )) or resid 131 through 137 or (resid 138 and (name N or name CA or name C or name O or name CB or name CG or name CD1)) or (resid 139 and (name N or name CA or name C or name O or name CB )) or resid 201))

(chain "C" and ((resid 4 and (name N or name CA or name C or name O or name CB or name CG )) or resid 5 through 8 or (resid 9 and (name N or name CA or name C or name O or name CB )) or resid 10 through 12 or (resid 13 and (name N or name CA or name C or name O or name CB )) or resid 14 or (resid 15 and (name N or name CA or name C or name O or name CB )) or resid 16 or (resid 17 and (name N or name CA or name C or name O or name CB )) or resid 18 or (resid 19 and (name N or name CA or name C or name O or name CB )) or resid 20 through 21 or (resid 22 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 23 and (name N or name CA or name C or name O or name CB )) or resid 24 or (resid 25 through 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 33 or (resid 34 and (name N or name CA or name C or name O or name CB )) or resid 35 through 36 or (resid 37 and (name N or name CA or name C or name O or name CB )) or (resid 38 and (name N or name CA or name C or name O or name CB or name CG )) or resid 39 or (resid 40 and (name N or name CA or name C or name O or name CB )) or resid 41 or (resid 42 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 through 48 or (resid 49 and (name N or name CA or name C or name O or name CB or name CG or name CD or name OE1)) or (resid 50 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 51 through 52 and (name N or name CA or name C or name O or name CB )) or resid 53 through 58 or (resid 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 62 or (resid 63 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 64 through 70 or (resid 71 and (name N or name CA or name C or name O or name CB or name CG1)) or resid 72 through 77 or (resid 78 and (name N or name CA or name C or name O or name CB )) or resid 79 or (resid 80 and (name N or name CA or name C or name O or name CB )) or resid 81 or (resid 82 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or (resid 83 and (name N or name CA or name C or name O or name CB )) or (resid 84 and (name N or name CA or name C or name O or name CB or name CG )) or (resid 85 through 87 and (name N or name CA or name C or name O or name CB )) or resid 88 through 89 or (resid 90 through 91 and (name N or name CA or name C or name O or name CB )) or resid 92 through 120 or (resid 121 and (name N or name CA or name C or name O or name CB or name CG or name CD2)) or (resid 122 through 130 and (name N or name CA or name C or name O or name CB )) or resid 131 through 137 or (resid 138 and (name N or name CA or name C or name O or name CB or name CG or name CD1)) or (resid 139 and (name N or name CA or name C or name O or name CB )) or resid 201))

(chain "D" and ((resid 4 and (name N or name CA or name C or name O or name CB or name CG )) or resid 5 through 8 or (resid 9 and (name N or name CA or name C or name O or name CB )) or resid 10 through 14 or (resid 15 and (name N or name CA or name C or name O or name CB )) or resid 16 or (resid 17 and (name N or name CA or name C or name O or name CB )) or resid 18 or (resid 19 and (name N or name CA or name C or name O or name CB )) or (resid 20 and (name N or name CA or name C or name O )) or (resid 21 and (name N or name CA or name C or name O or name CB )) or resid 22 or (resid 23 and (name N or name CA or name C or name O or name CB )) or resid 24 or (resid 25 through 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 36 or (resid 37 and (name N or name CA or name C or name O or name CB )) or (resid 38 and (name N or name CA or name C or name O or name CB or name CG )) or resid 39 or (resid 40 and (name N or name CA or name C or name O or name CB )) or resid 41 through 44 or (resid 45 and (name N or name CA or name C or name O or name CB )) or resid 46 or (resid 47 and (name N or name CA or name C or name O or name CB )) or resid 48 or (resid 49 and (name N or name CA or name C or name O or name CB or name CG or name CD or name OE1)) or (resid 50 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or resid 51 through 53 or (resid 54 and (name N or name CA or name C or name O or name CB or name CG or name CD or name CE )) or resid 55 through 58 or (resid 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 66 or (resid 67 and (name N or name CA or name C or name O or name CB )) or resid 68 through 70 or (resid 71 and (name N or name CA or name C or name O or name CB or name CG1)) or resid 72 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 77 or (resid 78 and (name N or name CA or name C or name O or name CB )) or resid 79 or (resid 80 and (name N or name CA or name C or name O or name CB )) or resid 81 or (resid 82 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 83 or (resid 84 and (name N or name CA or name C or name O or name CB or name CG )) or (resid 85 through 87 and (name N or name CA or name C or name O or name CB )) or resid 88 through 89 or (resid 90 through 91 and (name N or name CA or name C or name O or name CB )) or resid 92 through 94 or (resid 95 and (name N or name CA or name C or name O or name CB )) or resid 96 or (resid 97 through 99 and (name N or name CA or name C or name O or name CB )) or resid 100 through 102 or (resid 103 through 104 and (name N or name CA or name C or name O or name CB )) or resid 105 through 106 or (resid 107 through 109 and (name N or name CA or name C or name O )) or resid 110 through 121 or (resid 122 through 123 and (name N or name CA or name C or name O or name CB )) or resid 124 through 127 or (resid 128 through 130 and (name N or name CA or name C or name O or name CB )) or resid 131 through 137 or (resid 138 and (name N or name CA or name C or name O or name CB or name CG or name CD1)) or (resid 139 and (name N or name CA or name C or name O or name CB )) or resid 201))

(chain "E" and ((resid 4 and (name N or name CA or name C or name O or name CB or name CG )) or resid 5 through 8 or (resid 9 and (name N or name CA or name C or name O or name CB )) or resid 10 through 12 or (resid 13 and (name N or name CA or name C or name O or name CB )) or resid 14 or (resid 15 and (name N or name CA or name C or name O or name CB )) or resid 16 or (resid 17 and (name N or name CA or name C or name O or name CB )) or resid 18 through 19 or (resid 20 and (name N or name CA or name C or name O )) or (resid 21 and (name N or name CA or name C or name O or name CB )) or (resid 22 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or resid 23 through 24 or (resid 25 through 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 33 or (resid 34 and (name N or name CA or name C or name O or name CB )) or resid 35 through 36 or (resid 37 and (name N or name CA or name C or name O or name CB )) or (resid 38 and (name N or name CA or name C or name O or name CB or name CG )) or resid 39 or (resid 40 and (name N or name CA or name C or name O or name CB )) or resid 41 or (resid 42 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 through 48 or (resid 49 and (name N or name CA or name C or name O or name CB or name CG or name CD or name OE1)) or (resid 50 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 51 through 52 and (name N or name CA or name C or name O or name CB )) or resid 53 or (resid 54 and (name N or name CA or name C or name O or name CB or name CG or name CD or name CE )) or resid 55 through 56 or (resid 57 and (name N or name CA or name C or name O or name CB )) or resid 58 or (resid 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 62 or (resid 63 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 64 through 66 or (resid 67 and (name N or name CA or name C or name O or name CB )) or resid 68 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 81 or (resid 82 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or (resid 83 and (name N or name CA or name C or name O or name CB )) or (resid 84 and (name N or name CA or name C or name O or name CB or name CG )) or (resid 85 through 87 and (name N or name CA or name C or name O or name CB )) or resid 88 through 89 or (resid 90 through 91 and (name N or name CA or name C or name O or name CB )) or resid 92 through 94 or (resid 95 and (name N or name CA or name C or name O or name CB )) or resid 96 or (resid 97 through 99 and (name N or name CA or name C or name O or name CB )) or resid 100 through 102 or (resid 103 through 104 and (name N or name CA or name C or name O or name CB )) or resid 105 through 106 or (resid 107 through 109 and (name N or name CA or name C or name O )) or resid 110 through 120 or (resid 121 and (name N or name CA or name C or name O or name CB or name CG or name CD2)) or (resid 122 through 123 and (name N or name CA or name C or name O or name CB )) or (resid 124 through 130 and (name N or name CA or name C or name O or name CB )) or resid 131 through 138 or (resid 139 and (name N or name CA or name C or name O or name CB )) or resid 201))

(chain "F" and ((resid 4 and (name N or name CA or name C or name O or name CB or name CG )) or resid 5 through 8 or (resid 9 and (name N or name CA or name C or name O or name CB )) or resid 10 through 12 or (resid 13 and (name N or name CA or name C or name O or name CB )) or resid 14 or (resid 15 and (name N or name CA or name C or name O or name CB )) or resid 16 or (resid 17 and (name N or name CA or name C or name O or name CB )) or resid 18 or (resid 19 and (name N or name CA or name C or name O or name CB )) or (resid 20 and (name N or name CA or name C or name O )) or (resid 21 and (name N or name CA or name C or name O or name CB )) or (resid 22 and (name N or name CA or name C or name O or name CB or name CG1 or name CG2)) or (resid 23 and (name N or name CA or name C or name O or name CB )) or resid 24 through 33 or (resid 34 and (name N or name CA or name C or name O or name CB )) or resid 35 through 36 or (resid 37 and (name N or name CA or name C or name O or name CB )) or resid 38 through 39 or (resid 40 and (name N or name CA or name C or name O or name CB )) or resid 41 or (resid 42 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 or (resid 47 and (name N or name CA or name C or name O or name CB )) or resid 48 or (resid 49 and (name N or name CA or name C or name O or name CB or name CG or name CD or name OE1)) or resid 50 through 51 or (resid 52 and (name N or name CA or name C or name O or name CB )) or resid 53 or (resid 54 and (name N or name CA or name C or name O or name CB or name CG or name CD or name CE )) or resid 55 through 56 or (resid 57 and (name N or name CA or name C or name O or name CB )) or resid 58 through 62 or (resid 63 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or resid 64 through 66 or (resid 67 and (name N or name CA or name C or name O or name CB )) or resid 68 through 70 or (resid 71 and (name N or name CA or name C or name O or name CB or name CG1)) or resid 72 through 73 or (resid 74 and (name N or name CA or name C or name O or name CB )) or resid 75 through 77 or (resid 78 and (name N or name CA or name C or name O or name CB )) or resid 79 or (resid 80 and (name N or name CA or name C or name O or name CB )) or resid 81 or (resid 82 and (name N or name CA or name C or name O or name CB or name CG or name CD )) or (resid 83 and (name N or name CA or name C or name O or name CB )) or (resid 84 and (name N or name CA or name C or name O or name CB or name CG )) or (resid 85 through 87 and (name N or name CA or name C or name O or name CB )) or resid 88 through 89 or (resid 90 through 91 and (name N or name CA or name C or name O or name CB )) or resid 92 through 94 or (resid 95 and (name N or name CA or name C or name O or name CB )) or resid 96 or (resid 97 through 99 and (name N or name CA or name C or name O or name CB )) or resid 100 through 102 or (resid 103 through 104 and (name N or name CA or name C or name O or name CB )) or resid 105 through 106 or (resid 107 through 109 and (name N or name CA or name C or name O )) or resid 110 through 120 or (resid 121 and (name N or name CA or name C or name O or name CB or name CG or name CD2)) or (resid 122 through 123 and (name N or name CA or name C or name O or name CB )) or resid 124 through 127 or (resid 128 through 130 and (name N or name CA or name C or name O or name CB )) or resid 131 through 137 or (resid 138 and (name N or name CA or name C or name O or name CB or name CG or name CD1)) or (resid 139 and (name N or name CA or name C or name O or name CB )) or resid 201))

The largest off-origin peak in the Patterson function is 3.15% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)