wwPDB validation report of PDB entry 1JPL

ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3

Cation-Independent Mannose 6-phosphate receptor

GGA3 VHS DOMAIN COMPLEXED WITH C-TERMINAL PEPTIDE FROM CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR

ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3/Cation-Independent Mannose 6-phosphate receptor
GGA3 VHS domain complexed with C-terminal peptide from cation-independent mannose 6-phosphate receptor

The analyses of the Patterson function reveals a significant off-origin peak that is 22.01 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 6.2297e-03. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

20191225.v01 (using entries in the PDB archive December 25th 2019)

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures