wwPDB validation report of PDB entry 1IVX

1AV4 contains the copper-containing holo enzyme at 2.2 ANGSTROMS.

1AVL contains the copper-containing holo enzyme AT 2.8 ANGSTROMS.

1IQX contains the cobalt-substituted holo enzyme.

1IQY contains the nickel-substituted holo enzyme.

1IVU contains the same protein, Initial intermediate in topaquinone biogenesis.

1IVV contains the same protein, Early intermediate in topaquinone biogenesis.

1IVW contains the same protein, Late intermediate in topaquinone biogenesis.

Crystal structure of copper amine oxidase from Arthrobacter globiformis: Holo form generated by biogenesis in crystal.

The asymmetric unit is composed of a homo dimer, corresonding to one biological unit:x, y, z.

The analyses of the Patterson function reveals a significant off-origin peak that is 70.38 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 3.1513e-06. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

structure factor analysis and validation
geometric validation package for ligand chemistry in protein x-ray structures
20191225.v01 (using entries in the PDB archive December 25th 2019)