wwPDB validation report of PDB entry 3H7K

Agmatine iminohydrolase, Protein EMBRYO DEFECTIVE 1873

AUTHORS STATE THAT THE SEQUENCE MATCHES GENBANK ENTRY AAO63405.1. THE DISCREPANCY BETWEEN AUTHOR'S SEQUENCE AND THE SEQUENCE LISTED IN UNIPROT IS A KNOWN "SEQUENCE CONFLICT". THIS IS DOCUMENTED ON THE UNIPROT WEBSITE AT HTTP://WWW.UNIPROT.ORG/UNIPROT/Q8GWW7. AT THE WEBSITE TWO INDEPENDENT REFERENCES ARE PROVIDED. FURTHERMORE, AUTHOR'S ELECTRON DENSITY SHOWS NO SIGN OF ASPARTATE AT THIS POSITION. THIS SEQUENCE IS LIKELY JUST A NATURAL VARIATION, AND WAS NOT PRODUCED BY SITE-DIRECTED MUTAGENSIS.

HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY

Crystal Structure of Arabidopsis thaliana Agmatine Deiminase Complexed with a Covalently Bound Reaction Intermediate

biological unit is the same as asymmetric unit.

The largest off-origin peak in the Patterson function is 8.04% of the height of the origin peak. No significant pseudotranslation is detected.

20191225.v01 (using entries in the PDB archive December 25th 2019)

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures