wwPDB validation report of PDB entry 5GGP

Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

POMGnT1,UDP-GlcNAc:alpha-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I.2,GnT I.2

THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS

Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 (E.C.2.4.1.-), 10-mer Peptide from Dystroglycan
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide

The analyses of the Patterson function reveals a significant off-origin peak that is 25.42 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 3.1827e-03.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)