wwPDB validation report of PDB entry 3GDK

OMP decarboxylase, OMPdecase, OMPDCase, Uridine 5'-monophosphate synthase, UMP synthase

Crystal structure of orotidine 5'-phosphate decarboxylase (the same protein with different unit cell parameters)

Crystal structure of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate

Crystal structure of the K93R mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae

Crystal structure of the D91N mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae

Crystal structure of the D91N mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate

Orotidine 5'-phosphate decarboxylase (E.C.4.1.1.23)
Crystal structure of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae

The analyses of the Patterson function reveals a significant off-origin peak that is 47.17 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 1.0305e-04. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)