wwPDB validation report of PDB entry 6F28

THE PROTEIN CRYSTALLIZED IS THE EXTRACELLULAR LIGAND-BINDING DOMAIN OF GLUK3. TRANSMEMBRANE REGIONS WERE REPLACED WITH A GLY-THR LINKER (RESIDUES 119 AND 120 OF THE STRUCTURE). THE SEQUENCE MATCHES DISCONTINOUSLY WITH REFERENCE DATABASE (432-546, 669-806). THE FIRST THREE RESIDUES GLY-PRO-GLY ARE CLONING REMNANTS.
Glutamate receptor ionotropic, kainate 3,Glutamate receptor ionotropic, kainate 3

(2~{S})-2-azanyl-3-[6-methyl-2,4-bis(oxidanylidene)-5,7-dihydropyrrolo[3,4-d]pyrimidin-1-yl]propanoic acid

GluK3,Glutamate receptor 7,GluR7,GluK3,Glutamate receptor 7,GluR7

Crystal structure of the kainate receptor GluK3 ligand binding domain in complex with (S)-1-[2'-Amino-2'-carboxyethyl]-6-methyl-5,7-dihydropyrrolo[3,4-d]pyrimidin-2,4(1H,3H)-dione at resolution 2.4A

The largest off-origin peak in the Patterson function is 3.79% of the height of the origin peak. No significant pseudotranslation is detected.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)