wwPDB validation report of PDB entry 7DPI

Phenylalanyl-tRNA synthetase beta subunit

Plasmodium falciparum cytoplasmic Phenylalanyl-tRNA synthetase in complex with BRD7929
(chain A and (resid 278 through 295 or (resid 297 and (name N or name CA or name C or name O or name CB )) or resid 298 through 303 or (resid 304 and (name N or name CA or name C or name O or name CB )) or resid 305 through 330 or (resid 331 through 332 and (name N or name CA or name C or name O or name CB )) or resid 333 through 350 or (resid 351 through 352 and (name N or name CA or name C or name O or name CB )) or resid 353 through 356 or (resid 357 through 358 and (name N or name CA or name C or name O or name CB )) or resid 359 through 362 or (resid 363 through 366 and (name N or name CA or name C or name O or name CB )) or resid 367 through 377 or (resid 378 through 379 and (name N or name CA or name C or name O or name CB )) or resid 380 through 390 or (resid 391 through 392 and (name N or name CA or name C or name O or name CB )) or resid 393 through 396 or (resid 397 and (name N or name CA or name C or name O or name CB )) or resid 398 through 407 or (resid 408 and (name N or name CA or name C or name O or name CB )) or resid 409 through 428 or (resid 429 through 431 and (name N or name CA or name C or name O or name CB )) or resid 432 through 451 or (resid 452 and (name N or name CA or name C or name O or name CB )) or resid 453 through 460 or (resid 461 and (name N or name CA or name C or name O or name CB )) or resid 462 through 486 or (resid 487 and (name N or name CA or name C or name O or name CB )) or resid 488 through 493 or (resid 494 through 495 and (name N or name CA or name C or name O or name CB )) or resid 496 through 504 or (resid 505 and (name N or name CA or name C or name O or name CB )) or resid 506 through 516 or (resid 517 through 522 and (name N or name CA or name C or name O or name CB )) or resid 523 through 529 or (resid 530 and (name N or name CA or name C or name O or name CB )) or resid 531 through 536 or (resid 537 and (name N or name CA or name C or name O or name CB )) or resid 538 through 552 or (resid 553 through 554 and (name N or name CA or name C or name O or name CB )) or resid 555 through 562 or (resid 563 and (name N or name CA or name C or name O or name CB )) or resid 564 or (resid 565 through 568 and (name N or name CA or name C or name O or name CB )) or resid 569 through 571 or (resid 572 and (name N or name CA or name C or name O or name CB )) or resid 701))
(chain C and (resid 278 through 279 or (resid 280 through 281 and (name N or name CA or name C or name O or name CB )) or resid 282 or (resid 283 through 284 and (name N or name CA or name C or name O or name CB )) or resid 285 through 286 or (resid 287 through 288 and (name N or name CA or name C or name O or name CB )) or resid 290 or resid 297 through 328 or (resid 329 through 332 and (name N or name CA or name C or name O or name CB )) or resid 333 or (resid 334 and (name N or name CA or name C or name O or name CB )) or resid 335 through 378 or (resid 379 and (name N or name CA or name C or name O or name CB )) or resid 380 through 400 or (resid 401 through 402 and (name N or name CA or name C or name O or name CB )) or resid 403 or (resid 404 through 405 and (name N or name CA or name C or name O or name CB )) or resid 406 through 420 or (resid 421 through 422 and (name N or name CA or name C or name O or name CB )) or resid 423 through 424 or (resid 425 and (name N or name CA or name C or name O or name CB )) or resid 426 through 438 or (resid 439 and (name N or name CA or name C or name O or name CB )) or resid 440 through 450 or (resid 451 through 452 and (name N or name CA or name C or name O or name CB )) or resid 453 through 470 or (resid 471 and (name N or name CA or name C or name O or name CB )) or resid 472 through 476 or (resid 477 and (name N or name CA or name C or name O or name CB )) or resid 478 through 490 or (resid 491 and (name N or name CA or name C or name O or name CB )) or resid 492 through 518 or (resid 519 through 522 and (name N or name CA or name C or name O or name CB )) or resid 523 through 527 or (resid 528 through 530 and (name N or name CA or name C or name O or name CB )) or resid 531 or (resid 532 and (name N or name CA or name C or name O or name CB )) or resid 533 through 541 or (resid 542 and (name N or name CA or name C or name O or name CB )) or resid 543 through 553 or (resid 554 and (name N or name CA or name C or name O or name CB )) or resid 555 through 558 or (resid 559 and (name N or name CA or name C or name O or name CB )) or resid 560 through 572 or resid 701))
(chain B and ((resid 4 through 8 and (name N or name CA or name C or name O or name CB )) or resid 9 through 11 or (resid 12 and (name N or name CA or name C or name O or name CB )) or resid 13 through 28 or (resid 29 and (name N or name CA or name C or name O or name CB )) or resid 30 through 32 or (resid 33 through 35 and (name N or name CA or name C or name O or name CB )) or resid 36 through 38 or (resid 39 through 42 and (name N or name CA or name C or name O or name CB )) or resid 43 or (resid 44 through 45 and (name N or name CA or name C or name O or name CB )) or resid 46 through 48 or (resid 49 through 50 and (name N or name CA or name C or name O or name CB )) or resid 51 through 57 or (resid 58 through 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 63 or (resid 64 and (name N or name CA or name C or name O or name CB )) or resid 65 through 75 or (resid 76 through 77 and (name N or name CA or name C or name O or name CB )) or resid 106 through 114 or (resid 115 through 118 and (name N or name CA or name C or name O or name CB )) or resid 119 through 121 or (resid 122 through 123 and (name N or name CA or name C or name O or name CB )) or resid 124 through 129 or (resid 130 and (name N or name CA or name C or name O or name CB )) or resid 131 or (resid 132 through 139 and (name N or name CA or name C or name O or name CB )) or resid 140 through 155 or (resid 156 through 158 and (name N or name CA or name C or name O or name CB )) or resid 159 or (resid 160 and (name N or name CA or name C or name O or name CB )) or resid 161 through 162 or (resid 163 through 170 and (name N or name CA or name C or name O or name CB )) or resid 171 through 176 or (resid 177 through 178 and (name N or name CA or name C or name O or name CB )) or resid 179 through 186 or (resid 187 and (name N or name CA or name C or name O or name CB )) or resid 188 through 192 or (resid 193 through 197 and (name N or name CA or name C or name O or name CB )) or resid 198 through 201 or (resid 202 and (name N or name CA or name C or name O or name CB )) or (resid 230 and (name N or name CA or name C or name O or name CB )) or resid 231 through 234 or (resid 235 and (name N or name CA or name C or name O or name CB )) or resid 236 through 238 or (resid 239 through 243 and (name N or name CA or name C or name O or name CB )) or resid 244 through 248 or (resid 249 through 256 and (name N or name CA or name C or name O or name CB )) or resid 257 or (resid 258 through 260 and (name N or name CA or name C or name O or name CB )) or resid 261 through 263 or resid 270 through 276 or (resid 277 through 280 and (name N or name CA or name C or name O or name CB )) or resid 302 through 322 or (resid 323 and (name N or name CA or name C or name O or name CB )) or resid 324 through 342 or (resid 343 and (name N or name CA or name C or name O or name CB )) or resid 344 through 354 or (resid 355 through 356 and (name N or name CA or name C or name O or name CB )) or resid 357 through 358 or (resid 359 through 360 and (name N or name CA or name C or name O or name CB )) or resid 361 through 379 or (resid 380 through 381 and (name N or name CA or name C or name O or name CB )) or (resid 388 through 389 and (name N or name CA or name C or name O or name CB )) or resid 390 through 406 or (resid 407 and (name N or name CA or name C or name O or name CB )) or resid 408 through 415 or (resid 416 and (name N or name CA or name C or name O or name CB )) or resid 417 through 427 or (resid 428 and (name N or name CA or name C or name O or name CB )) or resid 429 through 434 or (resid 435 through 437 and (name N or name CA or name C or name O or name CB )) or resid 438 through 449 or (resid 450 and (name N or name CA or name C or name O or name CB )) or resid 451 through 453 or (resid 454 through 456 and (name N or name CA or name C or name O or name CB )) or resid 457 through 477 or (resid 478 and (name N or name CA or name C or name O or name CB )) or resid 479 through 480 or (resid 481 through 482 and (name N or name CA or name C or name O or name CB )) or resid 483 through 521 or (resid 522 through 524 and (name N or name CA or name C or name O or name CB )) or resid 525 through 538 or (resid 539 and (name N or name CA or name C or name O or name CB )) or resid 540 through 541 or (resid 542 and (name N or name CA or name C or name O or name CB )) or resid 543 through 544 or (resid 545 and (name N or name CA or name C or name O or name CB )) or resid 546 or (resid 547 through 548 and (name N or name CA or name C or name O or name CB )) or resid 557 through 595 or (resid 596 and (name N or name CA or name C or name O or name CB )) or resid 597 through 609 or (resid 610 and (name N or name CA or name C or name O or name CB )) or resid 611 through 616))
(chain D and ((resid 4 through 8 and (name N or name CA or name C or name O or name CB )) or resid 9 through 13 or (resid 14 and (name N or name CA or name C or name O or name CB )) or resid 15 through 39 or (resid 40 through 42 and (name N or name CA or name C or name O or name CB )) or resid 43 through 56 or (resid 57 through 59 and (name N or name CA or name C or name O or name CB )) or resid 60 through 116 or (resid 117 through 118 and (name N or name CA or name C or name O or name CB )) or resid 119 through 125 or (resid 126 and (name N or name CA or name C or name O or name CB )) or resid 127 or (resid 128 and (name N or name CA or name C or name O or name CB )) or resid 129 through 144 or (resid 150 through 158 and (name N or name CA or name C or name O or name CB )) or resid 159 through 161 or (resid 162 through 163 and (name N or name CA or name C or name O or name CB )) or resid 165 through 177 or (resid 178 and (name N or name CA or name C or name O or name CB )) or resid 179 through 183 or (resid 184 and (name N or name CA or name C or name O or name CB )) or resid 185 through 188 or (resid 189 through 190 and (name N or name CA or name C or name O or name CB )) or resid 191 or (resid 192 through 197 and (name N or name CA or name C or name O or name CB )) or resid 198 through 239 or (resid 240 through 243 and (name N or name CA or name C or name O or name CB )) or resid 244 through 272 or (resid 273 through 274 and (name N or name CA or name C or name O or name CB )) or resid 275 through 305 or (resid 306 and (name N or name CA or name C or name O or name CB )) or resid 307 or (resid 308 and (name N or name CA or name C or name O or name CB )) or resid 309 through 318 or (resid 319 and (name N or name CA or name C or name O or name CB )) or resid 320 or (resid 321 and (name N or name CA or name C or name O or name CB )) or resid 322 through 327 or (resid 328 and (name N or name CA or name C or name O or name CB )) or resid 329 through 334 or (resid 335 through 336 and (name N or name CA or name C or name O or name CB )) or resid 337 through 378 or (resid 379 through 389 and (name N or name CA or name C or name O or name CB )) or resid 390 through 435 or (resid 436 through 437 and (name N or name CA or name C or name O or name CB )) or resid 438 or (resid 439 and (name N or name CA or name C or name O or name CB )) or resid 440 through 442 or (resid 443 and (name N or name CA or name C or name O or name CB )) or resid 444 or (resid 445 through 447 and (name N or name CA or name C or name O or name CB )) or resid 448 or (resid 449 through 450 and (name N or name CA or name C or name O or name CB )) or resid 451 or (resid 452 through 456 and (name N or name CA or name C or name O or name CB )) or resid 457 or (resid 458 through 459 and (name N or name CA or name C or name O or name CB )) or resid 460 through 498 or (resid 499 and (name N or name CA or name C or name O or name CB )) or resid 500 through 548 or resid 557 through 561 or (resid 562 and (name N or name CA or name C or name O or name CB )) or resid 563 through 565 or (resid 566 and (name N or name CA or name C or name O or name CB )) or resid 567 through 569 or (resid 570 and (name N or name CA or name C or name O or name CB )) or resid 571 through 573 or (resid 574 through 576 and (name N or name CA or name C or name O or name CB )) or resid 577 through 580 or resid 583 through 597 or (resid 598 through 599 and (name N or name CA or name C or name O or name CB )) or resid 600 through 604 or (resid 605 and (name N or name CA or name C or name O or name CB )) or resid 606 through 616))
The largest off-origin peak in the Patterson function is 3.88% of the height of the origin peak. No significant pseudotranslation is detected.
structure factor analysis and validation
geometric validation package for ligand chemistry in protein x-ray structures
20191225.v01 (using entries in the PDB archive December 25th 2019)