wwPDB validation report of PDB entry 6BVA

Cyclin-A/CDK2-associated protein p19,p19A,Organ of Corti protein 2,OCP-2,Organ of Corti protein II,OCP-II,RNA polymerase II elongation factor-like protein,SIII,Transcription elongation factor B polypeptide 1-like,p19skp1

CXXC-type zinc finger protein 2,F-box and leucine-rich repeat protein 10,F-box protein FBL10,F-box/LRR-repeat protein 10,JmjC domain-containing histone demethylation protein 1B,Jumonji domain-containing EMSY-interactor methyltransferase motif protein,Protein JEMMA,Protein-containing CXXC domain 2,[Histone-H3]-lysine-36 demethylase 1B

CHAIN 'E' AND (RESID 1064 THROUGH 1076 )

CHAIN 'E' AND (RESID 1077 THROUGH 1087 )

CHAIN 'E' AND (RESID 1088 THROUGH 1097 )

CHAIN 'E' AND (RESID 1098 THROUGH 1103 )

CHAIN 'F' AND (RESID 1064 THROUGH 1087 )

CHAIN 'F' AND (RESID 1088 THROUGH 1103 )

S-phase kinase-associated protein 1, Lysine-specific demethylase 2B (E.C.1.14.11.27), Polyubiquitin-B
Ubiquitin Variant (UbV.Fl10.1) bound to a human Skp1-Fbl10 fragment complex.

The analyses of the Patterson function reveals a significant off-origin peak that is 44.36 % of the origin peak, indicating pseudo-translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 1.5434e-04. The detected translational NCS is most likely also responsible for the elevated intensity ratio. See the relevant section of the logfile for more details.

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures

20191225.v01 (using entries in the PDB archive December 25th 2019)