wwPDB validation report of PDB entry 3BVC

1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. COORDINATION PARAMETERS FOR BOUND METALS MAY DEVIATE SIGNIFICANTLY FROM IDEAL VALUES DUE TO LOW RESOLUTION OF DIFFRACTION DATA. 3. THE PRESENCE OF NICKEL BOUND TO THE PROTEIN WAS DETERMINED EXPERIMENTALLY, HOWEVER, IRON, WHICH IS A MOST LIKELY NATURAL LIGAND FOR THIS AND SIMILAR PROTEINS, MIGHT HAVE BEEN REPLACED WITH NICKEL DURING PROTEIN PURIFICATION USING A NICKEL RESIN.

Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM

The largest off-origin peak in the Patterson function is 7.14% of the height of the origin peak. No significant pseudotranslation is detected.

20191225.v01 (using entries in the PDB archive December 25th 2019)

structure factor analysis and validation

geometric validation package for ligand chemistry in protein x-ray structures