data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1j48_6180#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1j48.ent _PB_list.Output_file_name bmr4947_1j48_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4947_1j48_PB.str _PB_list.AA_seq_one_letter_code APAFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFVVRKSYTGSTPEGTPVGSVDCATAACNLGAGNSGLDLGHVALTF _PB_list.PB_seq_code zzcddddfehiaehiacddddehiaehiacdddddddehhiacddfklgccddddfkopacddddddfbdcdddfkopaebjadfklmccddddddfkbcfbjcdddzz _PB_list.PDB_ID 1J48 _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.237 _PB_list.PDBX_refine_ls_R_factor_R_work 0.185 _PB_list.PDBX_refine_ls_d_res_high 1.80 _PB_list.PDBX_refine_ls_d_res_low 500 _PB_list.Entry_ID 4947 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ALA . A . 1 ALA . 1 4947 1 1 1 1 2 PRO . A . 2 PRO . 1 4947 1 1 1 1 3 ALA . A . 3 ALA c 1 4947 1 1 1 1 4 PHE . A . 4 PHE d 1 4947 1 1 1 1 5 SER . A . 5 SER d 1 4947 1 1 1 1 6 VAL . A . 6 VAL d 1 4947 1 1 1 1 7 SER . A . 7 SER d 1 4947 1 1 1 1 8 PRO . A . 8 PRO f 1 4947 1 1 1 1 9 ALA . A . 9 ALA e 1 4947 1 1 1 1 10 SER . A . 10 SER h 1 4947 1 1 1 1 11 GLY . A . 11 GLY i 1 4947 1 1 1 1 12 LEU . A . 12 LEU a 1 4947 1 1 1 1 13 SER . A . 13 SER e 1 4947 1 1 1 1 14 ASP . A . 14 ASP h 1 4947 1 1 1 1 15 GLY . A . 15 GLY i 1 4947 1 1 1 1 16 GLN . A . 16 GLN a 1 4947 1 1 1 1 17 SER . A . 17 SER c 1 4947 1 1 1 1 18 VAL . A . 18 VAL d 1 4947 1 1 1 1 19 SER . A . 19 SER d 1 4947 1 1 1 1 20 VAL . A . 20 VAL d 1 4947 1 1 1 1 21 SER . A . 21 SER d 1 4947 1 1 1 1 22 VAL . A . 22 VAL e 1 4947 1 1 1 1 23 SER . A . 23 SER h 1 4947 1 1 1 1 24 GLY . A . 24 GLY i 1 4947 1 1 1 1 25 ALA . A . 25 ALA a 1 4947 1 1 1 1 26 ALA . A . 26 ALA e 1 4947 1 1 1 1 27 ALA . A A 27 ALA h 1 4947 1 1 1 1 28 GLY . A B 28 GLY i 1 4947 1 1 1 1 29 GLU . A . 29 GLU a 1 4947 1 1 1 1 30 THR . A . 30 THR c 1 4947 1 1 1 1 31 TYR . A . 31 TYR d 1 4947 1 1 1 1 32 TYR . A . 32 TYR d 1 4947 1 1 1 1 33 ILE . A . 33 ILE d 1 4947 1 1 1 1 34 ALA . A . 34 ALA d 1 4947 1 1 1 1 35 GLN . A . 35 GLN d 1 4947 1 1 1 1 36 CYS . A . 36 CYS d 1 4947 1 1 1 1 37 ALA . A . 37 ALA d 1 4947 1 1 1 1 38 PRO . A . 38 PRO e 1 4947 1 1 1 1 39 VAL . A . 39 VAL h 1 4947 1 1 1 1 40 GLY . A . 40 GLY h 1 4947 1 1 1 1 41 GLY . A . 41 GLY i 1 4947 1 1 1 1 42 GLN . A . 42 GLN a 1 4947 1 1 1 1 43 ASP . A . 43 ASP c 1 4947 1 1 1 1 44 ALA . A . 44 ALA d 1 4947 1 1 1 1 45 CYS . A . 45 CYS d 1 4947 1 1 1 1 46 ASN . A . 46 ASN f 1 4947 1 1 1 1 47 PRO . A . 47 PRO k 1 4947 1 1 1 1 48 ALA . A . 48 ALA l 1 4947 1 1 1 1 49 THR . A . 49 THR g 1 4947 1 1 1 1 50 ALA . A . 50 ALA c 1 4947 1 1 1 1 51 THR . A . 51 THR c 1 4947 1 1 1 1 52 SER . A . 52 SER d 1 4947 1 1 1 1 53 PHE . A . 53 PHE d 1 4947 1 1 1 1 54 THR . A . 54 THR d 1 4947 1 1 1 1 55 THR . A . 55 THR d 1 4947 1 1 1 1 56 ASP . A . 56 ASP f 1 4947 1 1 1 1 57 ALA . A . 57 ALA k 1 4947 1 1 1 1 58 SER . A . 58 SER o 1 4947 1 1 1 1 59 GLY . A . 59 GLY p 1 4947 1 1 1 1 60 ALA . A . 60 ALA a 1 4947 1 1 1 1 61 ALA . A . 61 ALA c 1 4947 1 1 1 1 62 SER . A . 62 SER d 1 4947 1 1 1 1 63 PHE . A . 63 PHE d 1 4947 1 1 1 1 64 SER . A . 64 SER d 1 4947 1 1 1 1 65 PHE . A . 65 PHE d 1 4947 1 1 1 1 66 VAL . A A 66 VAL d 1 4947 1 1 1 1 67 VAL . A . 67 VAL d 1 4947 1 1 1 1 68 ARG . A . 68 ARG f 1 4947 1 1 1 1 69 LYS . A . 69 LYS b 1 4947 1 1 1 1 70 SER . A . 70 SER d 1 4947 1 1 1 1 71 TYR . A . 71 TYR c 1 4947 1 1 1 1 72 THR . A . 72 THR d 1 4947 1 1 1 1 73 GLY . A . 73 GLY d 1 4947 1 1 1 1 74 SER . A . 74 SER d 1 4947 1 1 1 1 75 THR . A . 75 THR f 1 4947 1 1 1 1 76 PRO . A . 76 PRO k 1 4947 1 1 1 1 77 GLU . A . 77 GLU o 1 4947 1 1 1 1 78 GLY . A . 78 GLY p 1 4947 1 1 1 1 79 THR . A . 79 THR a 1 4947 1 1 1 1 80 PRO . A . 80 PRO e 1 4947 1 1 1 1 81 VAL . A . 81 VAL b 1 4947 1 1 1 1 82 GLY . A . 82 GLY j 1 4947 1 1 1 1 83 SER . A . 83 SER a 1 4947 1 1 1 1 84 VAL . A . 84 VAL d 1 4947 1 1 1 1 85 ASP . A . 85 ASP f 1 4947 1 1 1 1 86 CYS . A . 86 CYS k 1 4947 1 1 1 1 87 ALA . A . 87 ALA l 1 4947 1 1 1 1 88 THR . A . 88 THR m 1 4947 1 1 1 1 89 ALA . A . 89 ALA c 1 4947 1 1 1 1 90 ALA . A . 90 ALA c 1 4947 1 1 1 1 91 CYS . A . 91 CYS d 1 4947 1 1 1 1 92 ASN . A . 92 ASN d 1 4947 1 1 1 1 93 LEU . A . 93 LEU d 1 4947 1 1 1 1 94 GLY . A . 94 GLY d 1 4947 1 1 1 1 95 ALA . A . 95 ALA d 1 4947 1 1 1 1 96 GLY . A . 96 GLY d 1 4947 1 1 1 1 97 ASN . A . 97 ASN f 1 4947 1 1 1 1 98 SER . A . 98 SER k 1 4947 1 1 1 1 99 GLY . A . 99 GLY b 1 4947 1 1 1 1 100 LEU . A . 100 LEU c 1 4947 1 1 1 1 101 ASP . A . 101 ASP f 1 4947 1 1 1 1 102 LEU . A . 102 LEU b 1 4947 1 1 1 1 103 GLY . A . 103 GLY j 1 4947 1 1 1 1 104 HIS . A . 104 HIS c 1 4947 1 1 1 1 105 VAL . A . 105 VAL d 1 4947 1 1 1 1 106 ALA . A . 106 ALA d 1 4947 1 1 1 1 107 LEU . A . 107 LEU d 1 4947 1 1 1 1 108 THR . A . 108 THR . 1 4947 1 1 1 1 109 PHE . A . 109 PHE . 1 4947 1 1 1 1 110 GLY . A . 110 GLY . 1 4947 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1j48_6180#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1j48.ent _PB_list.Output_file_name bmr4947_1j48_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4947_1j48_PB.str _PB_list.AA_seq_one_letter_code APAFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFVVRKSYTGSTPEGTPVGSVDCATAACNLGAGNSGLDLGHVALTF _PB_list.PB_seq_code zzcddddfehiaehiacddddehiaehiacdddddddfehpacddfklgccddddfkopacddddddfbdcdddfkopaebjadfklmccddddddfkbcfbjcdddzz _PB_list.PDB_ID 1J48 _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.237 _PB_list.PDBX_refine_ls_R_factor_R_work 0.185 _PB_list.PDBX_refine_ls_d_res_high 1.80 _PB_list.PDBX_refine_ls_d_res_low 500 _PB_list.Entry_ID 4947 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ALA . B . 1 ALA . 1 4947 2 1 1 1 2 PRO . B . 2 PRO . 1 4947 2 1 1 1 3 ALA . B . 3 ALA c 1 4947 2 1 1 1 4 PHE . B . 4 PHE d 1 4947 2 1 1 1 5 SER . B . 5 SER d 1 4947 2 1 1 1 6 VAL . B . 6 VAL d 1 4947 2 1 1 1 7 SER . B . 7 SER d 1 4947 2 1 1 1 8 PRO . B . 8 PRO f 1 4947 2 1 1 1 9 ALA . B . 9 ALA e 1 4947 2 1 1 1 10 SER . B . 10 SER h 1 4947 2 1 1 1 11 GLY . B . 11 GLY i 1 4947 2 1 1 1 12 LEU . B . 12 LEU a 1 4947 2 1 1 1 13 SER . B . 13 SER e 1 4947 2 1 1 1 14 ASP . B . 14 ASP h 1 4947 2 1 1 1 15 GLY . B . 15 GLY i 1 4947 2 1 1 1 16 GLN . B . 16 GLN a 1 4947 2 1 1 1 17 SER . B . 17 SER c 1 4947 2 1 1 1 18 VAL . B . 18 VAL d 1 4947 2 1 1 1 19 SER . B . 19 SER d 1 4947 2 1 1 1 20 VAL . B . 20 VAL d 1 4947 2 1 1 1 21 SER . B . 21 SER d 1 4947 2 1 1 1 22 VAL . B . 22 VAL e 1 4947 2 1 1 1 23 SER . B . 23 SER h 1 4947 2 1 1 1 24 GLY . B . 24 GLY i 1 4947 2 1 1 1 25 ALA . B . 25 ALA a 1 4947 2 1 1 1 26 ALA . B . 26 ALA e 1 4947 2 1 1 1 27 ALA . B A 27 ALA h 1 4947 2 1 1 1 28 GLY . B B 28 GLY i 1 4947 2 1 1 1 29 GLU . B . 29 GLU a 1 4947 2 1 1 1 30 THR . B . 30 THR c 1 4947 2 1 1 1 31 TYR . B . 31 TYR d 1 4947 2 1 1 1 32 TYR . B . 32 TYR d 1 4947 2 1 1 1 33 ILE . B . 33 ILE d 1 4947 2 1 1 1 34 ALA . B . 34 ALA d 1 4947 2 1 1 1 35 GLN . B . 35 GLN d 1 4947 2 1 1 1 36 CYS . B . 36 CYS d 1 4947 2 1 1 1 37 ALA . B . 37 ALA d 1 4947 2 1 1 1 38 PRO . B . 38 PRO f 1 4947 2 1 1 1 39 VAL . B . 39 VAL e 1 4947 2 1 1 1 40 GLY . B . 40 GLY h 1 4947 2 1 1 1 41 GLY . B . 41 GLY p 1 4947 2 1 1 1 42 GLN . B . 42 GLN a 1 4947 2 1 1 1 43 ASP . B . 43 ASP c 1 4947 2 1 1 1 44 ALA . B . 44 ALA d 1 4947 2 1 1 1 45 CYS . B . 45 CYS d 1 4947 2 1 1 1 46 ASN . B . 46 ASN f 1 4947 2 1 1 1 47 PRO . B . 47 PRO k 1 4947 2 1 1 1 48 ALA . B . 48 ALA l 1 4947 2 1 1 1 49 THR . B . 49 THR g 1 4947 2 1 1 1 50 ALA . B . 50 ALA c 1 4947 2 1 1 1 51 THR . B . 51 THR c 1 4947 2 1 1 1 52 SER . B . 52 SER d 1 4947 2 1 1 1 53 PHE . B . 53 PHE d 1 4947 2 1 1 1 54 THR . B . 54 THR d 1 4947 2 1 1 1 55 THR . B . 55 THR d 1 4947 2 1 1 1 56 ASP . B . 56 ASP f 1 4947 2 1 1 1 57 ALA . B . 57 ALA k 1 4947 2 1 1 1 58 SER . B . 58 SER o 1 4947 2 1 1 1 59 GLY . B . 59 GLY p 1 4947 2 1 1 1 60 ALA . B . 60 ALA a 1 4947 2 1 1 1 61 ALA . B . 61 ALA c 1 4947 2 1 1 1 62 SER . B . 62 SER d 1 4947 2 1 1 1 63 PHE . B . 63 PHE d 1 4947 2 1 1 1 64 SER . B . 64 SER d 1 4947 2 1 1 1 65 PHE . B . 65 PHE d 1 4947 2 1 1 1 66 VAL . B A 66 VAL d 1 4947 2 1 1 1 67 VAL . B . 67 VAL d 1 4947 2 1 1 1 68 ARG . B . 68 ARG f 1 4947 2 1 1 1 69 LYS . B . 69 LYS b 1 4947 2 1 1 1 70 SER . B . 70 SER d 1 4947 2 1 1 1 71 TYR . B . 71 TYR c 1 4947 2 1 1 1 72 THR . B . 72 THR d 1 4947 2 1 1 1 73 GLY . B . 73 GLY d 1 4947 2 1 1 1 74 SER . B . 74 SER d 1 4947 2 1 1 1 75 THR . B . 75 THR f 1 4947 2 1 1 1 76 PRO . B . 76 PRO k 1 4947 2 1 1 1 77 GLU . B . 77 GLU o 1 4947 2 1 1 1 78 GLY . B . 78 GLY p 1 4947 2 1 1 1 79 THR . B . 79 THR a 1 4947 2 1 1 1 80 PRO . B . 80 PRO e 1 4947 2 1 1 1 81 VAL . B . 81 VAL b 1 4947 2 1 1 1 82 GLY . B . 82 GLY j 1 4947 2 1 1 1 83 SER . B . 83 SER a 1 4947 2 1 1 1 84 VAL . B . 84 VAL d 1 4947 2 1 1 1 85 ASP . B . 85 ASP f 1 4947 2 1 1 1 86 CYS . B . 86 CYS k 1 4947 2 1 1 1 87 ALA . B . 87 ALA l 1 4947 2 1 1 1 88 THR . B . 88 THR m 1 4947 2 1 1 1 89 ALA . B . 89 ALA c 1 4947 2 1 1 1 90 ALA . B . 90 ALA c 1 4947 2 1 1 1 91 CYS . B . 91 CYS d 1 4947 2 1 1 1 92 ASN . B . 92 ASN d 1 4947 2 1 1 1 93 LEU . B . 93 LEU d 1 4947 2 1 1 1 94 GLY . B . 94 GLY d 1 4947 2 1 1 1 95 ALA . B . 95 ALA d 1 4947 2 1 1 1 96 GLY . B . 96 GLY d 1 4947 2 1 1 1 97 ASN . B . 97 ASN f 1 4947 2 1 1 1 98 SER . B . 98 SER k 1 4947 2 1 1 1 99 GLY . B . 99 GLY b 1 4947 2 1 1 1 100 LEU . B . 100 LEU c 1 4947 2 1 1 1 101 ASP . B . 101 ASP f 1 4947 2 1 1 1 102 LEU . B . 102 LEU b 1 4947 2 1 1 1 103 GLY . B . 103 GLY j 1 4947 2 1 1 1 104 HIS . B . 104 HIS c 1 4947 2 1 1 1 105 VAL . B . 105 VAL d 1 4947 2 1 1 1 106 ALA . B . 106 ALA d 1 4947 2 1 1 1 107 LEU . B . 107 LEU d 1 4947 2 1 1 1 108 THR . B . 108 THR . 1 4947 2 1 1 1 109 PHE . B . 109 PHE . 1 4947 2 1 1 1 110 GLY . B . 110 GLY . 1 4947 2 stop_ save_