data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1oae_6450#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1oae.ent _PB_list.Output_file_name bmr4837_1oae_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4837_1oae_PB.str _PB_list.AA_seq_one_letter_code DVTNAEKLVYKYTNIAHSANPMYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEFTKHCNDILGADCSPSEKANFIAYLLTETKPTK _PB_list.PB_seq_code zzlmmmmmmmmmmmmmmmmmmlmbdcfklmmmmmmpccddfkopacdfklmnojbfkbccddfklopacddfblklmmmgoklmmlmmmmmmmmmmmmnopacdfklmmmmmmmmmmmmbcczz _PB_list.PDB_ID 1OAE _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.243 _PB_list.PDBX_refine_ls_R_factor_R_work 0.185 _PB_list.PDBX_refine_ls_d_res_high 1.95 _PB_list.PDBX_refine_ls_d_res_low 25.00 _PB_list.Entry_ID 4837 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ASP . A . 1 ASP . 1 4837 1 1 1 1 2 VAL . A . 2 VAL . 1 4837 1 1 1 1 3 THR . A . 3 THR l 1 4837 1 1 1 1 4 ASN . A . 4 ASN m 1 4837 1 1 1 1 5 ALA . A . 5 ALA m 1 4837 1 1 1 1 6 GLU . A . 6 GLU m 1 4837 1 1 1 1 7 LYS . A . 7 LYS m 1 4837 1 1 1 1 8 LEU . A . 8 LEU m 1 4837 1 1 1 1 9 VAL . A . 9 VAL m 1 4837 1 1 1 1 10 TYR . A . 10 TYR m 1 4837 1 1 1 1 11 LYS . A . 11 LYS m 1 4837 1 1 1 1 12 TYR . A . 12 TYR m 1 4837 1 1 1 1 13 THR . A . 13 THR m 1 4837 1 1 1 1 14 ASN . A . 14 ASN m 1 4837 1 1 1 1 15 ILE . A . 15 ILE m 1 4837 1 1 1 1 16 ALA . A . 16 ALA m 1 4837 1 1 1 1 17 HIS . A . 17 HIS m 1 4837 1 1 1 1 18 SER . A . 18 SER m 1 4837 1 1 1 1 19 ALA . A . 19 ALA m 1 4837 1 1 1 1 20 ASN . A . 20 ASN m 1 4837 1 1 1 1 21 PRO . A . 21 PRO m 1 4837 1 1 1 1 22 MET . A . 22 MET l 1 4837 1 1 1 1 23 TYR . A . 23 TYR m 1 4837 1 1 1 1 24 GLU . A . 24 GLU b 1 4837 1 1 1 1 25 ALA . A . 25 ALA d 1 4837 1 1 1 1 26 PRO . A . 26 PRO c 1 4837 1 1 1 1 27 SER . A . 27 SER f 1 4837 1 1 1 1 28 ILE . A . 28 ILE k 1 4837 1 1 1 1 29 THR . A . 29 THR l 1 4837 1 1 1 1 30 ASP . A . 30 ASP m 1 4837 1 1 1 1 31 GLY . A . 31 GLY m 1 4837 1 1 1 1 32 LYS . A . 32 LYS m 1 4837 1 1 1 1 33 ILE . A . 33 ILE m 1 4837 1 1 1 1 34 PHE . A . 34 PHE m 1 4837 1 1 1 1 35 PHE . A . 35 PHE m 1 4837 1 1 1 1 36 ASN . A . 36 ASN p 1 4837 1 1 1 1 37 ARG . A . 37 ARG c 1 4837 1 1 1 1 38 LYS . A . 38 LYS c 1 4837 1 1 1 1 39 PHE . A . 39 PHE d 1 4837 1 1 1 1 40 LYS . A . 40 LYS d 1 4837 1 1 1 1 41 THR . A . 41 THR f 1 4837 1 1 1 1 42 PRO . A . 42 PRO k 1 4837 1 1 1 1 43 SER . A . 43 SER o 1 4837 1 1 1 1 44 GLY . A . 44 GLY p 1 4837 1 1 1 1 45 LYS . A . 45 LYS a 1 4837 1 1 1 1 46 GLU . A . 46 GLU c 1 4837 1 1 1 1 47 ALA . A . 47 ALA d 1 4837 1 1 1 1 48 ALA . A . 48 ALA f 1 4837 1 1 1 1 49 CYS . A . 49 CYS k 1 4837 1 1 1 1 50 ALA . A . 50 ALA l 1 4837 1 1 1 1 51 SER . A . 51 SER m 1 4837 1 1 1 1 52 CYS . A . 52 CYS n 1 4837 1 1 1 1 53 HIS . A . 53 HIS o 1 4837 1 1 1 1 54 THR . A . 54 THR j 1 4837 1 1 1 1 55 ASN . A . 55 ASN b 1 4837 1 1 1 1 56 ASN . A . 56 ASN f 1 4837 1 1 1 1 57 PRO . A . 57 PRO k 1 4837 1 1 1 1 58 ALA . A . 58 ALA b 1 4837 1 1 1 1 59 ASN . A . 59 ASN c 1 4837 1 1 1 1 60 VAL . A . 60 VAL c 1 4837 1 1 1 1 61 GLY . A . 61 GLY d 1 4837 1 1 1 1 62 LYS . A . 62 LYS d 1 4837 1 1 1 1 63 ASN . A . 63 ASN f 1 4837 1 1 1 1 64 ILE . A . 64 ILE k 1 4837 1 1 1 1 65 VAL . A . 65 VAL l 1 4837 1 1 1 1 66 THR . A . 66 THR o 1 4837 1 1 1 1 67 GLY . A . 67 GLY p 1 4837 1 1 1 1 68 LYS . A . 68 LYS a 1 4837 1 1 1 1 69 GLU . A . 69 GLU c 1 4837 1 1 1 1 70 ILE . A . 70 ILE d 1 4837 1 1 1 1 71 PRO . A . 71 PRO d 1 4837 1 1 1 1 72 PRO . A . 72 PRO f 1 4837 1 1 1 1 73 LEU . A . 73 LEU b 1 4837 1 1 1 1 74 ALA . A . 74 ALA l 1 4837 1 1 1 1 75 PRO . A . 75 PRO k 1 4837 1 1 1 1 76 ARG . A . 76 ARG l 1 4837 1 1 1 1 77 VAL . A . 77 VAL m 1 4837 1 1 1 1 78 ASN . A . 78 ASN m 1 4837 1 1 1 1 79 THR . A . 79 THR m 1 4837 1 1 1 1 80 LYS . A . 80 LYS g 1 4837 1 1 1 1 81 ARG . A . 81 ARG o 1 4837 1 1 1 1 82 PHE . A . 82 PHE k 1 4837 1 1 1 1 83 THR . A . 83 THR l 1 4837 1 1 1 1 84 ASP . A . 84 ASP m 1 4837 1 1 1 1 85 ILE . A . 85 ILE m 1 4837 1 1 1 1 86 ASP . A . 86 ASP l 1 4837 1 1 1 1 87 LYS . A . 87 LYS m 1 4837 1 1 1 1 88 VAL . A . 88 VAL m 1 4837 1 1 1 1 89 GLU . A . 89 GLU m 1 4837 1 1 1 1 90 ASP . A . 90 ASP m 1 4837 1 1 1 1 91 GLU . A . 91 GLU m 1 4837 1 1 1 1 92 PHE . A . 92 PHE m 1 4837 1 1 1 1 93 THR . A . 93 THR m 1 4837 1 1 1 1 94 LYS . A . 94 LYS m 1 4837 1 1 1 1 95 HIS . A . 95 HIS m 1 4837 1 1 1 1 96 CYS . A . 96 CYS m 1 4837 1 1 1 1 97 ASN . A . 97 ASN m 1 4837 1 1 1 1 98 ASP . A . 98 ASP m 1 4837 1 1 1 1 99 ILE . A . 99 ILE n 1 4837 1 1 1 1 100 LEU . A . 100 LEU o 1 4837 1 1 1 1 101 GLY . A . 101 GLY p 1 4837 1 1 1 1 102 ALA . A . 102 ALA a 1 4837 1 1 1 1 103 ASP . A . 103 ASP c 1 4837 1 1 1 1 104 CYS . A . 104 CYS d 1 4837 1 1 1 1 105 SER . A . 105 SER f 1 4837 1 1 1 1 106 PRO . A . 106 PRO k 1 4837 1 1 1 1 107 SER . A . 107 SER l 1 4837 1 1 1 1 108 GLU . A . 108 GLU m 1 4837 1 1 1 1 109 LYS . A . 109 LYS m 1 4837 1 1 1 1 110 ALA . A . 110 ALA m 1 4837 1 1 1 1 111 ASN . A . 111 ASN m 1 4837 1 1 1 1 112 PHE . A . 112 PHE m 1 4837 1 1 1 1 113 ILE . A . 113 ILE m 1 4837 1 1 1 1 114 ALA . A . 114 ALA m 1 4837 1 1 1 1 115 TYR . A . 115 TYR m 1 4837 1 1 1 1 116 LEU . A . 116 LEU m 1 4837 1 1 1 1 117 LEU . A . 117 LEU m 1 4837 1 1 1 1 118 THR . A . 118 THR m 1 4837 1 1 1 1 119 GLU . A . 119 GLU m 1 4837 1 1 1 1 120 THR . A . 120 THR b 1 4837 1 1 1 1 121 LYS . A . 121 LYS c 1 4837 1 1 1 1 122 PRO . A . 122 PRO c 1 4837 1 1 1 1 123 THR . A . 123 THR . 1 4837 1 1 1 1 124 LYS . A . 124 LYS . 1 4837 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1oae_6450#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1oae.ent _PB_list.Output_file_name bmr4837_1oae_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4837_1oae_PB.str _PB_list.AA_seq_one_letter_code DVTNAEKLVYKYTNIAHSANPMYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEFTKHCNDILGADCSPSEKANFIAYLLTETKPTK _PB_list.PB_seq_code zzlmmmmmmmmmmmmmmmmmmlmbdcfklmmmmmmpccddfkopacdfklmnopbfkbccddfknopacddfblklmmmgokblmlmmmmmmmmmmmmnopacdfklmmmmmmmmmmpcbdczz _PB_list.PDB_ID 1OAE _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.243 _PB_list.PDBX_refine_ls_R_factor_R_work 0.185 _PB_list.PDBX_refine_ls_d_res_high 1.95 _PB_list.PDBX_refine_ls_d_res_low 25.00 _PB_list.Entry_ID 4837 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 ASP . B . 1 ASP . 1 4837 2 1 1 1 2 VAL . B . 2 VAL . 1 4837 2 1 1 1 3 THR . B . 3 THR l 1 4837 2 1 1 1 4 ASN . B . 4 ASN m 1 4837 2 1 1 1 5 ALA . B . 5 ALA m 1 4837 2 1 1 1 6 GLU . B . 6 GLU m 1 4837 2 1 1 1 7 LYS . B . 7 LYS m 1 4837 2 1 1 1 8 LEU . B . 8 LEU m 1 4837 2 1 1 1 9 VAL . B . 9 VAL m 1 4837 2 1 1 1 10 TYR . B . 10 TYR m 1 4837 2 1 1 1 11 LYS . B . 11 LYS m 1 4837 2 1 1 1 12 TYR . B . 12 TYR m 1 4837 2 1 1 1 13 THR . B . 13 THR m 1 4837 2 1 1 1 14 ASN . B . 14 ASN m 1 4837 2 1 1 1 15 ILE . B . 15 ILE m 1 4837 2 1 1 1 16 ALA . B . 16 ALA m 1 4837 2 1 1 1 17 HIS . B . 17 HIS m 1 4837 2 1 1 1 18 SER . B . 18 SER m 1 4837 2 1 1 1 19 ALA . B . 19 ALA m 1 4837 2 1 1 1 20 ASN . B . 20 ASN m 1 4837 2 1 1 1 21 PRO . B . 21 PRO m 1 4837 2 1 1 1 22 MET . B . 22 MET l 1 4837 2 1 1 1 23 TYR . B . 23 TYR m 1 4837 2 1 1 1 24 GLU . B . 24 GLU b 1 4837 2 1 1 1 25 ALA . B . 25 ALA d 1 4837 2 1 1 1 26 PRO . B . 26 PRO c 1 4837 2 1 1 1 27 SER . B . 27 SER f 1 4837 2 1 1 1 28 ILE . B . 28 ILE k 1 4837 2 1 1 1 29 THR . B . 29 THR l 1 4837 2 1 1 1 30 ASP . B . 30 ASP m 1 4837 2 1 1 1 31 GLY . B . 31 GLY m 1 4837 2 1 1 1 32 LYS . B . 32 LYS m 1 4837 2 1 1 1 33 ILE . B . 33 ILE m 1 4837 2 1 1 1 34 PHE . B . 34 PHE m 1 4837 2 1 1 1 35 PHE . B . 35 PHE m 1 4837 2 1 1 1 36 ASN . B . 36 ASN p 1 4837 2 1 1 1 37 ARG . B . 37 ARG c 1 4837 2 1 1 1 38 LYS . B . 38 LYS c 1 4837 2 1 1 1 39 PHE . B . 39 PHE d 1 4837 2 1 1 1 40 LYS . B . 40 LYS d 1 4837 2 1 1 1 41 THR . B . 41 THR f 1 4837 2 1 1 1 42 PRO . B . 42 PRO k 1 4837 2 1 1 1 43 SER . B . 43 SER o 1 4837 2 1 1 1 44 GLY . B . 44 GLY p 1 4837 2 1 1 1 45 LYS . B . 45 LYS a 1 4837 2 1 1 1 46 GLU . B . 46 GLU c 1 4837 2 1 1 1 47 ALA . B . 47 ALA d 1 4837 2 1 1 1 48 ALA . B . 48 ALA f 1 4837 2 1 1 1 49 CYS . B . 49 CYS k 1 4837 2 1 1 1 50 ALA . B . 50 ALA l 1 4837 2 1 1 1 51 SER . B . 51 SER m 1 4837 2 1 1 1 52 CYS . B . 52 CYS n 1 4837 2 1 1 1 53 HIS . B . 53 HIS o 1 4837 2 1 1 1 54 THR . B . 54 THR p 1 4837 2 1 1 1 55 ASN . B . 55 ASN b 1 4837 2 1 1 1 56 ASN . B . 56 ASN f 1 4837 2 1 1 1 57 PRO . B . 57 PRO k 1 4837 2 1 1 1 58 ALA . B . 58 ALA b 1 4837 2 1 1 1 59 ASN . B . 59 ASN c 1 4837 2 1 1 1 60 VAL . B . 60 VAL c 1 4837 2 1 1 1 61 GLY . B . 61 GLY d 1 4837 2 1 1 1 62 LYS . B . 62 LYS d 1 4837 2 1 1 1 63 ASN . B . 63 ASN f 1 4837 2 1 1 1 64 ILE . B . 64 ILE k 1 4837 2 1 1 1 65 VAL . B . 65 VAL n 1 4837 2 1 1 1 66 THR . B . 66 THR o 1 4837 2 1 1 1 67 GLY . B . 67 GLY p 1 4837 2 1 1 1 68 LYS . B . 68 LYS a 1 4837 2 1 1 1 69 GLU . B . 69 GLU c 1 4837 2 1 1 1 70 ILE . B . 70 ILE d 1 4837 2 1 1 1 71 PRO . B . 71 PRO d 1 4837 2 1 1 1 72 PRO . B . 72 PRO f 1 4837 2 1 1 1 73 LEU . B . 73 LEU b 1 4837 2 1 1 1 74 ALA . B . 74 ALA l 1 4837 2 1 1 1 75 PRO . B . 75 PRO k 1 4837 2 1 1 1 76 ARG . B . 76 ARG l 1 4837 2 1 1 1 77 VAL . B . 77 VAL m 1 4837 2 1 1 1 78 ASN . B . 78 ASN m 1 4837 2 1 1 1 79 THR . B . 79 THR m 1 4837 2 1 1 1 80 LYS . B . 80 LYS g 1 4837 2 1 1 1 81 ARG . B . 81 ARG o 1 4837 2 1 1 1 82 PHE . B . 82 PHE k 1 4837 2 1 1 1 83 THR . B . 83 THR b 1 4837 2 1 1 1 84 ASP . B . 84 ASP l 1 4837 2 1 1 1 85 ILE . B . 85 ILE m 1 4837 2 1 1 1 86 ASP . B . 86 ASP l 1 4837 2 1 1 1 87 LYS . B . 87 LYS m 1 4837 2 1 1 1 88 VAL . B . 88 VAL m 1 4837 2 1 1 1 89 GLU . B . 89 GLU m 1 4837 2 1 1 1 90 ASP . B . 90 ASP m 1 4837 2 1 1 1 91 GLU . B . 91 GLU m 1 4837 2 1 1 1 92 PHE . B . 92 PHE m 1 4837 2 1 1 1 93 THR . B . 93 THR m 1 4837 2 1 1 1 94 LYS . B . 94 LYS m 1 4837 2 1 1 1 95 HIS . B . 95 HIS m 1 4837 2 1 1 1 96 CYS . B . 96 CYS m 1 4837 2 1 1 1 97 ASN . B . 97 ASN m 1 4837 2 1 1 1 98 ASP . B . 98 ASP m 1 4837 2 1 1 1 99 ILE . B . 99 ILE n 1 4837 2 1 1 1 100 LEU . B . 100 LEU o 1 4837 2 1 1 1 101 GLY . B . 101 GLY p 1 4837 2 1 1 1 102 ALA . B . 102 ALA a 1 4837 2 1 1 1 103 ASP . B . 103 ASP c 1 4837 2 1 1 1 104 CYS . B . 104 CYS d 1 4837 2 1 1 1 105 SER . B . 105 SER f 1 4837 2 1 1 1 106 PRO . B . 106 PRO k 1 4837 2 1 1 1 107 SER . B . 107 SER l 1 4837 2 1 1 1 108 GLU . B . 108 GLU m 1 4837 2 1 1 1 109 LYS . B . 109 LYS m 1 4837 2 1 1 1 110 ALA . B . 110 ALA m 1 4837 2 1 1 1 111 ASN . B . 111 ASN m 1 4837 2 1 1 1 112 PHE . B . 112 PHE m 1 4837 2 1 1 1 113 ILE . B . 113 ILE m 1 4837 2 1 1 1 114 ALA . B . 114 ALA m 1 4837 2 1 1 1 115 TYR . B . 115 TYR m 1 4837 2 1 1 1 116 LEU . B . 116 LEU m 1 4837 2 1 1 1 117 LEU . B . 117 LEU m 1 4837 2 1 1 1 118 THR . B . 118 THR p 1 4837 2 1 1 1 119 GLU . B . 119 GLU c 1 4837 2 1 1 1 120 THR . B . 120 THR b 1 4837 2 1 1 1 121 LYS . B . 121 LYS d 1 4837 2 1 1 1 122 PRO . B . 122 PRO c 1 4837 2 1 1 1 123 THR . B . 123 THR . 1 4837 2 1 1 1 124 LYS . B . 124 LYS . 1 4837 2 stop_ save_