data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1dlf_6062#L _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1dlf.ent _PB_list.Output_file_name bmr4580_1dlf_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4580_1dlf_PB.str _PB_list.AA_seq_one_letter_code DVVMTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEIKR _PB_list.PB_seq_code zzdddddfbdcddehiacddddddfbdfbdfkopacdddddddehiacddfbgghiaccehiafkbccedehjaccdddehiafklgccdddddfkbccddddebjaddddzz _PB_list.PDB_ID 1DLF _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.23 _PB_list.PDBX_refine_ls_R_factor_R_work 0.183 _PB_list.PDBX_refine_ls_d_res_high 1.45 _PB_list.PDBX_refine_ls_d_res_low 8.00 _PB_list.Entry_ID 4580 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 2 1 2 1 ASP . L . 1 ASP . 1 4580 1 2 1 2 2 VAL . L . 2 VAL . 1 4580 1 2 1 2 3 VAL . L . 3 VAL d 1 4580 1 2 1 2 4 MET . L . 4 MET d 1 4580 1 2 1 2 5 THR . L . 5 THR d 1 4580 1 2 1 2 6 GLN . L . 6 GLN d 1 4580 1 2 1 2 7 THR . L . 7 THR d 1 4580 1 2 1 2 8 PRO . L . 8 PRO f 1 4580 1 2 1 2 9 LEU . L . 9 LEU b 1 4580 1 2 1 2 10 SER . L . 10 SER d 1 4580 1 2 1 2 11 LEU . L . 11 LEU c 1 4580 1 2 1 2 12 PRO . L . 12 PRO d 1 4580 1 2 1 2 13 VAL . L . 13 VAL d 1 4580 1 2 1 2 14 SER . L . 14 SER e 1 4580 1 2 1 2 15 LEU . L . 15 LEU h 1 4580 1 2 1 2 16 GLY . L . 16 GLY i 1 4580 1 2 1 2 17 ASN . L . 17 ASN a 1 4580 1 2 1 2 18 GLN . L . 18 GLN c 1 4580 1 2 1 2 19 ALA . L . 19 ALA d 1 4580 1 2 1 2 20 SER . L . 20 SER d 1 4580 1 2 1 2 21 ILE . L . 21 ILE d 1 4580 1 2 1 2 22 SER . L . 22 SER d 1 4580 1 2 1 2 23 CYS . L . 23 CYS d 1 4580 1 2 1 2 24 ARG . L . 24 ARG d 1 4580 1 2 1 2 25 SER . L . 25 SER f 1 4580 1 2 1 2 26 SER . L . 26 SER b 1 4580 1 2 1 2 27 GLN . L . 27 GLN d 1 4580 1 2 1 2 28 SER . L A 28 SER f 1 4580 1 2 1 2 29 LEU . L B 29 LEU b 1 4580 1 2 1 2 30 VAL . L C 30 VAL d 1 4580 1 2 1 2 31 HIS . L D 31 HIS f 1 4580 1 2 1 2 32 SER . L E 32 SER k 1 4580 1 2 1 2 33 ASN . L . 33 ASN o 1 4580 1 2 1 2 34 GLY . L . 34 GLY p 1 4580 1 2 1 2 35 ASN . L . 35 ASN a 1 4580 1 2 1 2 36 THR . L . 36 THR c 1 4580 1 2 1 2 37 TYR . L . 37 TYR d 1 4580 1 2 1 2 38 LEU . L . 38 LEU d 1 4580 1 2 1 2 39 HIS . L . 39 HIS d 1 4580 1 2 1 2 40 TRP . L . 40 TRP d 1 4580 1 2 1 2 41 TYR . L . 41 TYR d 1 4580 1 2 1 2 42 LEU . L . 42 LEU d 1 4580 1 2 1 2 43 GLN . L . 43 GLN d 1 4580 1 2 1 2 44 LYS . L . 44 LYS e 1 4580 1 2 1 2 45 PRO . L . 45 PRO h 1 4580 1 2 1 2 46 GLY . L . 46 GLY i 1 4580 1 2 1 2 47 GLN . L . 47 GLN a 1 4580 1 2 1 2 48 SER . L . 48 SER c 1 4580 1 2 1 2 49 PRO . L . 49 PRO d 1 4580 1 2 1 2 50 LYS . L . 50 LYS d 1 4580 1 2 1 2 51 LEU . L . 51 LEU f 1 4580 1 2 1 2 52 LEU . L . 52 LEU b 1 4580 1 2 1 2 53 ILE . L . 53 ILE g 1 4580 1 2 1 2 54 TYR . L . 54 TYR g 1 4580 1 2 1 2 55 LYS . L . 55 LYS h 1 4580 1 2 1 2 56 VAL . L . 56 VAL i 1 4580 1 2 1 2 57 SER . L . 57 SER a 1 4580 1 2 1 2 58 ASN . L . 58 ASN c 1 4580 1 2 1 2 59 ARG . L . 59 ARG c 1 4580 1 2 1 2 60 PHE . L . 60 PHE e 1 4580 1 2 1 2 61 SER . L . 61 SER h 1 4580 1 2 1 2 62 GLY . L . 62 GLY i 1 4580 1 2 1 2 63 VAL . L . 63 VAL a 1 4580 1 2 1 2 64 PRO . L . 64 PRO f 1 4580 1 2 1 2 65 ASP . L . 65 ASP k 1 4580 1 2 1 2 66 ARG . L . 66 ARG b 1 4580 1 2 1 2 67 PHE . L . 67 PHE c 1 4580 1 2 1 2 68 SER . L . 68 SER c 1 4580 1 2 1 2 69 GLY . L . 69 GLY e 1 4580 1 2 1 2 70 SER . L . 70 SER d 1 4580 1 2 1 2 71 GLY . L . 71 GLY e 1 4580 1 2 1 2 72 SER . L . 72 SER h 1 4580 1 2 1 2 73 GLY . L . 73 GLY j 1 4580 1 2 1 2 74 THR . L . 74 THR a 1 4580 1 2 1 2 75 ASP . L . 75 ASP c 1 4580 1 2 1 2 76 PHE . L . 76 PHE c 1 4580 1 2 1 2 77 THR . L . 77 THR d 1 4580 1 2 1 2 78 LEU . L . 78 LEU d 1 4580 1 2 1 2 79 LYS . L . 79 LYS d 1 4580 1 2 1 2 80 ILE . L . 80 ILE e 1 4580 1 2 1 2 81 SER . L . 81 SER h 1 4580 1 2 1 2 82 ARG . L . 82 ARG i 1 4580 1 2 1 2 83 VAL . L . 83 VAL a 1 4580 1 2 1 2 84 GLU . L . 84 GLU f 1 4580 1 2 1 2 85 ALA . L . 85 ALA k 1 4580 1 2 1 2 86 GLU . L . 86 GLU l 1 4580 1 2 1 2 87 ASP . L . 87 ASP g 1 4580 1 2 1 2 88 LEU . L . 88 LEU c 1 4580 1 2 1 2 89 GLY . L . 89 GLY c 1 4580 1 2 1 2 90 VAL . L . 90 VAL d 1 4580 1 2 1 2 91 TYR . L . 91 TYR d 1 4580 1 2 1 2 92 PHE . L . 92 PHE d 1 4580 1 2 1 2 93 CYS . L . 93 CYS d 1 4580 1 2 1 2 94 SER . L . 94 SER d 1 4580 1 2 1 2 95 GLN . L . 95 GLN f 1 4580 1 2 1 2 96 SER . L . 96 SER k 1 4580 1 2 1 2 97 THR . L . 97 THR b 1 4580 1 2 1 2 98 HIS . L . 98 HIS c 1 4580 1 2 1 2 99 VAL . L . 99 VAL c 1 4580 1 2 1 2 100 PRO . L . 100 PRO d 1 4580 1 2 1 2 101 PHE . L . 101 PHE d 1 4580 1 2 1 2 102 THR . L . 102 THR d 1 4580 1 2 1 2 103 PHE . L . 103 PHE d 1 4580 1 2 1 2 104 GLY . L . 104 GLY e 1 4580 1 2 1 2 105 SER . L . 105 SER b 1 4580 1 2 1 2 106 GLY . L . 106 GLY j 1 4580 1 2 1 2 107 THR . L . 107 THR a 1 4580 1 2 1 2 108 LYS . L . 108 LYS d 1 4580 1 2 1 2 109 LEU . L . 109 LEU d 1 4580 1 2 1 2 110 GLU . L . 110 GLU d 1 4580 1 2 1 2 111 ILE . L . 111 ILE d 1 4580 1 2 1 2 112 LYS . L . 112 LYS . 1 4580 1 2 1 2 113 ARG . L . 113 ARG . 1 4580 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1dlf_6062#H _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1dlf.ent _PB_list.Output_file_name bmr4580_1dlf_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr4580_1dlf_PB.str _PB_list.AA_seq_one_letter_code EVKLEESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIYYHYPWFAYWGQGTLVTVS _PB_list.PB_seq_code zzdddehiacddehiacddddddehiafklpccddddddfklopadfbdcddfkloopacddfklgojaccdddfklopacdddehiafklgccddddddehjbdcdfbccebpadddzz _PB_list.PDB_ID 1DLF _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.23 _PB_list.PDBX_refine_ls_R_factor_R_work 0.183 _PB_list.PDBX_refine_ls_d_res_high 1.45 _PB_list.PDBX_refine_ls_d_res_low 8.00 _PB_list.Entry_ID 4580 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 GLU . H . 1 GLU . 1 4580 2 1 1 1 2 VAL . H . 2 VAL . 1 4580 2 1 1 1 3 LYS . H . 3 LYS d 1 4580 2 1 1 1 4 LEU . H . 4 LEU d 1 4580 2 1 1 1 5 GLU . H . 5 GLU d 1 4580 2 1 1 1 6 GLU . H . 6 GLU e 1 4580 2 1 1 1 7 SER . H . 7 SER h 1 4580 2 1 1 1 8 GLY . H . 8 GLY i 1 4580 2 1 1 1 9 GLY . H . 9 GLY a 1 4580 2 1 1 1 10 GLY . H . 10 GLY c 1 4580 2 1 1 1 11 LEU . H . 11 LEU d 1 4580 2 1 1 1 12 VAL . H . 12 VAL d 1 4580 2 1 1 1 13 GLN . H . 13 GLN e 1 4580 2 1 1 1 14 PRO . H . 14 PRO h 1 4580 2 1 1 1 15 GLY . H . 15 GLY i 1 4580 2 1 1 1 16 GLY . H . 16 GLY a 1 4580 2 1 1 1 17 SER . H . 17 SER c 1 4580 2 1 1 1 18 MET . H . 18 MET d 1 4580 2 1 1 1 19 LYS . H . 19 LYS d 1 4580 2 1 1 1 20 LEU . H . 20 LEU d 1 4580 2 1 1 1 21 SER . H . 21 SER d 1 4580 2 1 1 1 22 CYS . H . 22 CYS d 1 4580 2 1 1 1 23 ALA . H . 23 ALA d 1 4580 2 1 1 1 24 THR . H . 24 THR e 1 4580 2 1 1 1 25 SER . H . 25 SER h 1 4580 2 1 1 1 26 GLY . H . 26 GLY i 1 4580 2 1 1 1 27 PHE . H . 27 PHE a 1 4580 2 1 1 1 28 THR . H . 28 THR f 1 4580 2 1 1 1 29 PHE . H . 29 PHE k 1 4580 2 1 1 1 30 SER . H . 30 SER l 1 4580 2 1 1 1 31 ASP . H . 31 ASP p 1 4580 2 1 1 1 32 ALA . H . 32 ALA c 1 4580 2 1 1 1 33 TRP . H . 33 TRP c 1 4580 2 1 1 1 34 MET . H . 34 MET d 1 4580 2 1 1 1 35 ASP . H . 35 ASP d 1 4580 2 1 1 1 36 TRP . H . 36 TRP d 1 4580 2 1 1 1 37 VAL . H . 37 VAL d 1 4580 2 1 1 1 38 ARG . H . 38 ARG d 1 4580 2 1 1 1 39 GLN . H . 39 GLN d 1 4580 2 1 1 1 40 SER . H . 40 SER f 1 4580 2 1 1 1 41 PRO . H . 41 PRO k 1 4580 2 1 1 1 42 GLU . H . 42 GLU l 1 4580 2 1 1 1 43 LYS . H . 43 LYS o 1 4580 2 1 1 1 44 GLY . H . 44 GLY p 1 4580 2 1 1 1 45 LEU . H . 45 LEU a 1 4580 2 1 1 1 46 GLU . H . 46 GLU d 1 4580 2 1 1 1 47 TRP . H . 47 TRP f 1 4580 2 1 1 1 48 VAL . H . 48 VAL b 1 4580 2 1 1 1 49 ALA . H . 49 ALA d 1 4580 2 1 1 1 50 GLU . H . 50 GLU c 1 4580 2 1 1 1 51 ILE . H . 51 ILE d 1 4580 2 1 1 1 52 ARG . H . 52 ARG d 1 4580 2 1 1 1 53 ASN . H A 53 ASN f 1 4580 2 1 1 1 54 LYS . H B 54 LYS k 1 4580 2 1 1 1 55 ALA . H C 55 ALA l 1 4580 2 1 1 1 56 ASN . H . 56 ASN o 1 4580 2 1 1 1 57 ASN . H . 57 ASN o 1 4580 2 1 1 1 58 HIS . H . 58 HIS p 1 4580 2 1 1 1 59 ALA . H . 59 ALA a 1 4580 2 1 1 1 60 THR . H . 60 THR c 1 4580 2 1 1 1 61 TYR . H . 61 TYR d 1 4580 2 1 1 1 62 TYR . H . 62 TYR d 1 4580 2 1 1 1 63 ALA . H . 63 ALA f 1 4580 2 1 1 1 64 GLU . H . 64 GLU k 1 4580 2 1 1 1 65 SER . H . 65 SER l 1 4580 2 1 1 1 66 VAL . H . 66 VAL g 1 4580 2 1 1 1 67 LYS . H . 67 LYS o 1 4580 2 1 1 1 68 GLY . H . 68 GLY j 1 4580 2 1 1 1 69 ARG . H . 69 ARG a 1 4580 2 1 1 1 70 PHE . H . 70 PHE c 1 4580 2 1 1 1 71 THR . H . 71 THR c 1 4580 2 1 1 1 72 ILE . H . 72 ILE d 1 4580 2 1 1 1 73 SER . H . 73 SER d 1 4580 2 1 1 1 74 ARG . H . 74 ARG d 1 4580 2 1 1 1 75 ASP . H . 75 ASP f 1 4580 2 1 1 1 76 ASP . H . 76 ASP k 1 4580 2 1 1 1 77 SER . H . 77 SER l 1 4580 2 1 1 1 78 LYS . H . 78 LYS o 1 4580 2 1 1 1 79 ARG . H . 79 ARG p 1 4580 2 1 1 1 80 ARG . H . 80 ARG a 1 4580 2 1 1 1 81 VAL . H . 81 VAL c 1 4580 2 1 1 1 82 TYR . H . 82 TYR d 1 4580 2 1 1 1 83 LEU . H . 83 LEU d 1 4580 2 1 1 1 84 GLN . H . 84 GLN d 1 4580 2 1 1 1 85 MET . H . 85 MET e 1 4580 2 1 1 1 86 ASN . H A 86 ASN h 1 4580 2 1 1 1 87 THR . H B 87 THR i 1 4580 2 1 1 1 88 LEU . H C 88 LEU a 1 4580 2 1 1 1 89 ARG . H . 89 ARG f 1 4580 2 1 1 1 90 ALA . H . 90 ALA k 1 4580 2 1 1 1 91 GLU . H . 91 GLU l 1 4580 2 1 1 1 92 ASP . H . 92 ASP g 1 4580 2 1 1 1 93 THR . H . 93 THR c 1 4580 2 1 1 1 94 GLY . H . 94 GLY c 1 4580 2 1 1 1 95 ILE . H . 95 ILE d 1 4580 2 1 1 1 96 TYR . H . 96 TYR d 1 4580 2 1 1 1 97 TYR . H . 97 TYR d 1 4580 2 1 1 1 98 CYS . H . 98 CYS d 1 4580 2 1 1 1 99 THR . H . 99 THR d 1 4580 2 1 1 1 100 GLY . H . 100 GLY d 1 4580 2 1 1 1 101 ILE . H . 101 ILE e 1 4580 2 1 1 1 102 TYR . H . 102 TYR h 1 4580 2 1 1 1 103 TYR . H . 103 TYR j 1 4580 2 1 1 1 104 HIS . H . 104 HIS b 1 4580 2 1 1 1 105 TYR . H . 105 TYR d 1 4580 2 1 1 1 106 PRO . H . 106 PRO c 1 4580 2 1 1 1 107 TRP . H . 107 TRP d 1 4580 2 1 1 1 108 PHE . H . 108 PHE f 1 4580 2 1 1 1 109 ALA . H . 109 ALA b 1 4580 2 1 1 1 110 TYR . H . 110 TYR c 1 4580 2 1 1 1 111 TRP . H . 111 TRP c 1 4580 2 1 1 1 112 GLY . H . 112 GLY e 1 4580 2 1 1 1 113 GLN . H . 113 GLN b 1 4580 2 1 1 1 114 GLY . H . 114 GLY p 1 4580 2 1 1 1 115 THR . H . 115 THR a 1 4580 2 1 1 1 116 LEU . H . 116 LEU d 1 4580 2 1 1 1 117 VAL . H . 117 VAL d 1 4580 2 1 1 1 118 THR . H . 118 THR d 1 4580 2 1 1 1 119 VAL . H . 119 VAL . 1 4580 2 1 1 1 120 SER . H . 120 SER . 1 4580 2 1 1 1 121 ALA . H . 121 ALA . 1 4580 2 1 1 1 122 GLU . H . 122 GLU . 1 4580 2 1 1 1 123 PRO . H . 123 PRO . 1 4580 2 1 1 1 124 ARG . H . 124 ARG . 1 4580 2 stop_ save_