data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1jvt_6219#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1jvt.ent _PB_list.Output_file_name bmr443_1jvt_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr443_1jvt_PB.str _PB_list.AA_seq_one_letter_code KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV _PB_list.PB_seq_code zzfklmmmmmmgcfkbcbdfblmlmmmmmmmnopamnbccfbacdddddfklmmmmmmmccdddfkopakbccdfbdcddddddddfklccfbdcddddddddddddddedjddddfbdfbdzz _PB_list.PDB_ID 1JVT _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.24 _PB_list.PDBX_refine_ls_R_factor_R_work 0.17 _PB_list.PDBX_refine_ls_d_res_high 2.05 _PB_list.PDBX_refine_ls_d_res_low 8.00 _PB_list.Entry_ID 443 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 LYS . A . 1 LYS . 1 443 1 1 1 1 2 GLU . A . 2 GLU . 1 443 1 1 1 1 3 THR . A . 3 THR f 1 443 1 1 1 1 4 ALA . A . 4 ALA k 1 443 1 1 1 1 5 ALA . A . 5 ALA l 1 443 1 1 1 1 6 ALA . A . 6 ALA m 1 443 1 1 1 1 7 LYS . A . 7 LYS m 1 443 1 1 1 1 8 PHE . A . 8 PHE m 1 443 1 1 1 1 9 GLU . A . 9 GLU m 1 443 1 1 1 1 10 ARG . A . 10 ARG m 1 443 1 1 1 1 11 GLN . A . 11 GLN m 1 443 1 1 1 1 12 HIS . A . 12 HIS g 1 443 1 1 1 1 13 MET . A . 13 MET c 1 443 1 1 1 1 14 ASP . A . 14 ASP f 1 443 1 1 1 1 15 SER . A . 15 SER k 1 443 1 1 1 1 16 SER . A . 16 SER b 1 443 1 1 1 1 17 THR . A . 17 THR c 1 443 1 1 1 1 18 SER . A . 18 SER b 1 443 1 1 1 1 19 ALA . A . 19 ALA d 1 443 1 1 1 1 20 ALA . A . 20 ALA f 1 443 1 1 1 1 21 SER . A . 21 SER b 1 443 1 1 1 1 22 SER . A . 22 SER l 1 443 1 1 1 1 23 SER . A . 23 SER m 1 443 1 1 1 1 24 ASN . A . 24 ASN l 1 443 1 1 1 1 25 TYR . A . 25 TYR m 1 443 1 1 1 1 26 CYS . A . 26 CYS m 1 443 1 1 1 1 27 ASN . A . 27 ASN m 1 443 1 1 1 1 28 GLN . A . 28 GLN m 1 443 1 1 1 1 29 MET . A . 29 MET m 1 443 1 1 1 1 30 MET . A . 30 MET m 1 443 1 1 1 1 31 LYS . A . 31 LYS m 1 443 1 1 1 1 32 SER . A . 32 SER n 1 443 1 1 1 1 33 ARG . A . 33 ARG o 1 443 1 1 1 1 34 ASN . A . 34 ASN p 1 443 1 1 1 1 35 LEU . A . 35 LEU a 1 443 1 1 1 1 36 THR . A . 36 THR m 1 443 1 1 1 1 37 LYS . A . 37 LYS n 1 443 1 1 1 1 38 ASP . A . 38 ASP b 1 443 1 1 1 1 39 ARG . A . 39 ARG c 1 443 1 1 1 1 40 CYS . A . 40 CYS c 1 443 1 1 1 1 41 LYS . A . 41 LYS f 1 443 1 1 1 1 42 PRO . A . 42 PRO b 1 443 1 1 1 1 43 VAL . A . 43 VAL a 1 443 1 1 1 1 44 ASN . A . 44 ASN c 1 443 1 1 1 1 45 THR . A . 45 THR d 1 443 1 1 1 1 46 PHE . A . 46 PHE d 1 443 1 1 1 1 47 VAL . A . 47 VAL d 1 443 1 1 1 1 48 HIS . A . 48 HIS d 1 443 1 1 1 1 49 GLU . A . 49 GLU d 1 443 1 1 1 1 50 SER . A . 50 SER f 1 443 1 1 1 1 51 LEU . A . 51 LEU k 1 443 1 1 1 1 52 ALA . A . 52 ALA l 1 443 1 1 1 1 53 ASP . A . 53 ASP m 1 443 1 1 1 1 54 VAL . A . 54 VAL m 1 443 1 1 1 1 55 GLN . A . 55 GLN m 1 443 1 1 1 1 56 ALA . A . 56 ALA m 1 443 1 1 1 1 57 VAL . A . 57 VAL m 1 443 1 1 1 1 58 CYS . A . 58 CYS m 1 443 1 1 1 1 59 SER . A . 59 SER m 1 443 1 1 1 1 60 GLN . A . 60 GLN c 1 443 1 1 1 1 61 LYS . A . 61 LYS c 1 443 1 1 1 1 62 ASN . A . 62 ASN d 1 443 1 1 1 1 63 VAL . A . 63 VAL d 1 443 1 1 1 1 64 ALA . A . 64 ALA d 1 443 1 1 1 1 65 CYS . A . 65 CYS f 1 443 1 1 1 1 66 LYS . A . 66 LYS k 1 443 1 1 1 1 67 ASN . A . 67 ASN o 1 443 1 1 1 1 68 GLY . A . 68 GLY p 1 443 1 1 1 1 69 GLN . A . 69 GLN a 1 443 1 1 1 1 70 THR . A . 70 THR k 1 443 1 1 1 1 71 ASN . A . 71 ASN b 1 443 1 1 1 1 72 CYS . A . 72 CYS c 1 443 1 1 1 1 73 TYR . A . 73 TYR c 1 443 1 1 1 1 74 GLN . A . 74 GLN d 1 443 1 1 1 1 75 SER . A . 75 SER f 1 443 1 1 1 1 76 TYR . A . 76 TYR b 1 443 1 1 1 1 77 SER . A . 77 SER d 1 443 1 1 1 1 78 THR . A . 78 THR c 1 443 1 1 1 1 79 MET . A . 79 MET d 1 443 1 1 1 1 80 SER . A . 80 SER d 1 443 1 1 1 1 81 ILE . A . 81 ILE d 1 443 1 1 1 1 82 THR . A . 82 THR d 1 443 1 1 1 1 83 ASP . A . 83 ASP d 1 443 1 1 1 1 84 CYS . A . 84 CYS d 1 443 1 1 1 1 85 ARG . A . 85 ARG d 1 443 1 1 1 1 86 GLU . A . 86 GLU d 1 443 1 1 1 1 87 THR . A . 87 THR f 1 443 1 1 1 1 88 GLY . A . 88 GLY k 1 443 1 1 1 1 89 SER . A . 89 SER l 1 443 1 1 1 1 90 SER . A . 90 SER c 1 443 1 1 1 1 91 LYS . A . 91 LYS c 1 443 1 1 1 1 92 TYR . A . 92 TYR f 1 443 1 1 1 1 93 PRO . A . 93 PRO b 1 443 1 1 1 1 94 ASN . A . 94 ASN d 1 443 1 1 1 1 95 CYS . A . 95 CYS c 1 443 1 1 1 1 96 ALA . A . 96 ALA d 1 443 1 1 1 1 97 TYR . A . 97 TYR d 1 443 1 1 1 1 98 LYS . A . 98 LYS d 1 443 1 1 1 1 99 THR . A . 99 THR d 1 443 1 1 1 1 100 THR . A . 100 THR d 1 443 1 1 1 1 101 GLN . A . 101 GLN d 1 443 1 1 1 1 102 ALA . A . 102 ALA d 1 443 1 1 1 1 103 ASN . A . 103 ASN d 1 443 1 1 1 1 104 LYS . A . 104 LYS d 1 443 1 1 1 1 105 HIS . A . 105 HIS d 1 443 1 1 1 1 106 ILE . A . 106 ILE d 1 443 1 1 1 1 107 ILE . A . 107 ILE d 1 443 1 1 1 1 108 VAL . A . 108 VAL d 1 443 1 1 1 1 109 ALA . A . 109 ALA d 1 443 1 1 1 1 110 CYS . A . 110 CYS e 1 443 1 1 1 1 111 GLU . A . 111 GLU d 1 443 1 1 1 1 112 GLY . A . 112 GLY j 1 443 1 1 1 1 113 ASN . A . 113 ASN d 1 443 1 1 1 1 114 PRO . A . 114 PRO d 1 443 1 1 1 1 115 TYR . A . 115 TYR d 1 443 1 1 1 1 116 VAL . A . 116 VAL d 1 443 1 1 1 1 117 PRO . A . 117 PRO f 1 443 1 1 1 1 118 VAL . A . 118 VAL b 1 443 1 1 1 1 119 HIS . A . 119 HIS d 1 443 1 1 1 1 120 PHE . A . 120 PHE f 1 443 1 1 1 1 121 ASP . A . 121 ASP b 1 443 1 1 1 1 122 ALA . A . 122 ALA d 1 443 1 1 1 1 123 SER . A . 123 SER . 1 443 1 1 1 1 124 VAL . A . 124 VAL . 1 443 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1jvt_6219#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1jvt.ent _PB_list.Output_file_name bmr443_1jvt_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr443_1jvt_PB.str _PB_list.AA_seq_one_letter_code KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV _PB_list.PB_seq_code zzfklmmmmmmgcfkbmcdfblmlmmmmmmmnopammmccfbacdddddfklmmmmmmmccdddfkopacbccdfbdcddddddddfklccfbdcddddddddddddddedjddddfbdfbdzz _PB_list.PDB_ID 1JVT _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.24 _PB_list.PDBX_refine_ls_R_factor_R_work 0.17 _PB_list.PDBX_refine_ls_d_res_high 2.05 _PB_list.PDBX_refine_ls_d_res_low 8.00 _PB_list.Entry_ID 443 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 LYS . B . 1 LYS . 1 443 2 1 1 1 2 GLU . B . 2 GLU . 1 443 2 1 1 1 3 THR . B . 3 THR f 1 443 2 1 1 1 4 ALA . B . 4 ALA k 1 443 2 1 1 1 5 ALA . B . 5 ALA l 1 443 2 1 1 1 6 ALA . B . 6 ALA m 1 443 2 1 1 1 7 LYS . B . 7 LYS m 1 443 2 1 1 1 8 PHE . B . 8 PHE m 1 443 2 1 1 1 9 GLU . B . 9 GLU m 1 443 2 1 1 1 10 ARG . B . 10 ARG m 1 443 2 1 1 1 11 GLN . B . 11 GLN m 1 443 2 1 1 1 12 HIS . B . 12 HIS g 1 443 2 1 1 1 13 MET . B . 13 MET c 1 443 2 1 1 1 14 ASP . B . 14 ASP f 1 443 2 1 1 1 15 SER . B . 15 SER k 1 443 2 1 1 1 16 SER . B . 16 SER b 1 443 2 1 1 1 17 THR . B . 17 THR m 1 443 2 1 1 1 18 SER . B . 18 SER c 1 443 2 1 1 1 19 ALA . B . 19 ALA d 1 443 2 1 1 1 20 ALA . B . 20 ALA f 1 443 2 1 1 1 21 SER . B . 21 SER b 1 443 2 1 1 1 22 SER . B . 22 SER l 1 443 2 1 1 1 23 SER . B . 23 SER m 1 443 2 1 1 1 24 ASN . B . 24 ASN l 1 443 2 1 1 1 25 TYR . B . 25 TYR m 1 443 2 1 1 1 26 CYS . B . 26 CYS m 1 443 2 1 1 1 27 ASN . B . 27 ASN m 1 443 2 1 1 1 28 GLN . B . 28 GLN m 1 443 2 1 1 1 29 MET . B . 29 MET m 1 443 2 1 1 1 30 MET . B . 30 MET m 1 443 2 1 1 1 31 LYS . B . 31 LYS m 1 443 2 1 1 1 32 SER . B . 32 SER n 1 443 2 1 1 1 33 ARG . B . 33 ARG o 1 443 2 1 1 1 34 ASN . B . 34 ASN p 1 443 2 1 1 1 35 LEU . B . 35 LEU a 1 443 2 1 1 1 36 THR . B . 36 THR m 1 443 2 1 1 1 37 LYS . B . 37 LYS m 1 443 2 1 1 1 38 ASP . B . 38 ASP m 1 443 2 1 1 1 39 ARG . B . 39 ARG c 1 443 2 1 1 1 40 CYS . B . 40 CYS c 1 443 2 1 1 1 41 LYS . B . 41 LYS f 1 443 2 1 1 1 42 PRO . B . 42 PRO b 1 443 2 1 1 1 43 VAL . B . 43 VAL a 1 443 2 1 1 1 44 ASN . B . 44 ASN c 1 443 2 1 1 1 45 THR . B . 45 THR d 1 443 2 1 1 1 46 PHE . B . 46 PHE d 1 443 2 1 1 1 47 VAL . B . 47 VAL d 1 443 2 1 1 1 48 HIS . B . 48 HIS d 1 443 2 1 1 1 49 GLU . B . 49 GLU d 1 443 2 1 1 1 50 SER . B . 50 SER f 1 443 2 1 1 1 51 LEU . B . 51 LEU k 1 443 2 1 1 1 52 ALA . B . 52 ALA l 1 443 2 1 1 1 53 ASP . B . 53 ASP m 1 443 2 1 1 1 54 VAL . B . 54 VAL m 1 443 2 1 1 1 55 GLN . B . 55 GLN m 1 443 2 1 1 1 56 ALA . B . 56 ALA m 1 443 2 1 1 1 57 VAL . B . 57 VAL m 1 443 2 1 1 1 58 CYS . B . 58 CYS m 1 443 2 1 1 1 59 SER . B . 59 SER m 1 443 2 1 1 1 60 GLN . B . 60 GLN c 1 443 2 1 1 1 61 LYS . B . 61 LYS c 1 443 2 1 1 1 62 ASN . B . 62 ASN d 1 443 2 1 1 1 63 VAL . B . 63 VAL d 1 443 2 1 1 1 64 ALA . B . 64 ALA d 1 443 2 1 1 1 65 CYS . B . 65 CYS f 1 443 2 1 1 1 66 LYS . B . 66 LYS k 1 443 2 1 1 1 67 ASN . B . 67 ASN o 1 443 2 1 1 1 68 GLY . B . 68 GLY p 1 443 2 1 1 1 69 GLN . B . 69 GLN a 1 443 2 1 1 1 70 THR . B . 70 THR c 1 443 2 1 1 1 71 ASN . B . 71 ASN b 1 443 2 1 1 1 72 CYS . B . 72 CYS c 1 443 2 1 1 1 73 TYR . B . 73 TYR c 1 443 2 1 1 1 74 GLN . B . 74 GLN d 1 443 2 1 1 1 75 SER . B . 75 SER f 1 443 2 1 1 1 76 TYR . B . 76 TYR b 1 443 2 1 1 1 77 SER . B . 77 SER d 1 443 2 1 1 1 78 THR . B . 78 THR c 1 443 2 1 1 1 79 MET . B . 79 MET d 1 443 2 1 1 1 80 SER . B . 80 SER d 1 443 2 1 1 1 81 ILE . B . 81 ILE d 1 443 2 1 1 1 82 THR . B . 82 THR d 1 443 2 1 1 1 83 ASP . B . 83 ASP d 1 443 2 1 1 1 84 CYS . B . 84 CYS d 1 443 2 1 1 1 85 ARG . B . 85 ARG d 1 443 2 1 1 1 86 GLU . B . 86 GLU d 1 443 2 1 1 1 87 THR . B . 87 THR f 1 443 2 1 1 1 88 GLY . B . 88 GLY k 1 443 2 1 1 1 89 SER . B . 89 SER l 1 443 2 1 1 1 90 SER . B . 90 SER c 1 443 2 1 1 1 91 LYS . B . 91 LYS c 1 443 2 1 1 1 92 TYR . B . 92 TYR f 1 443 2 1 1 1 93 PRO . B . 93 PRO b 1 443 2 1 1 1 94 ASN . B . 94 ASN d 1 443 2 1 1 1 95 CYS . B . 95 CYS c 1 443 2 1 1 1 96 ALA . B . 96 ALA d 1 443 2 1 1 1 97 TYR . B . 97 TYR d 1 443 2 1 1 1 98 LYS . B . 98 LYS d 1 443 2 1 1 1 99 THR . B . 99 THR d 1 443 2 1 1 1 100 THR . B . 100 THR d 1 443 2 1 1 1 101 GLN . B . 101 GLN d 1 443 2 1 1 1 102 ALA . B . 102 ALA d 1 443 2 1 1 1 103 ASN . B . 103 ASN d 1 443 2 1 1 1 104 LYS . B . 104 LYS d 1 443 2 1 1 1 105 HIS . B . 105 HIS d 1 443 2 1 1 1 106 ILE . B . 106 ILE d 1 443 2 1 1 1 107 ILE . B . 107 ILE d 1 443 2 1 1 1 108 VAL . B . 108 VAL d 1 443 2 1 1 1 109 ALA . B . 109 ALA d 1 443 2 1 1 1 110 CYS . B . 110 CYS e 1 443 2 1 1 1 111 GLU . B . 111 GLU d 1 443 2 1 1 1 112 GLY . B . 112 GLY j 1 443 2 1 1 1 113 ASN . B . 113 ASN d 1 443 2 1 1 1 114 PRO . B . 114 PRO d 1 443 2 1 1 1 115 TYR . B . 115 TYR d 1 443 2 1 1 1 116 VAL . B . 116 VAL d 1 443 2 1 1 1 117 PRO . B . 117 PRO f 1 443 2 1 1 1 118 VAL . B . 118 VAL b 1 443 2 1 1 1 119 HIS . B . 119 HIS d 1 443 2 1 1 1 120 PHE . B . 120 PHE f 1 443 2 1 1 1 121 ASP . B . 121 ASP b 1 443 2 1 1 1 122 ALA . B . 122 ALA d 1 443 2 1 1 1 123 SER . B . 123 SER . 1 443 2 1 1 1 124 VAL . B . 124 VAL . 1 443 2 stop_ save_