data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1pmk_6723#A _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1pmk.ent _PB_list.Output_file_name bmr2474_1pmk_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr2474_1pmk_PB.str _PB_list.AA_seq_one_letter_code CYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKC _PB_list.PB_seq_code zzcjolmpccdbfbdfeopacddfkbmmlpccfbdfklmmmlccefjbccdfbfcfbdcdddfbfklmbdcdddddzz _PB_list.PDB_ID 1PMK _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_d_res_high 2.25 _PB_list.PDBX_refine_ls_d_res_low 7.0 _PB_list.Entry_ID 2474 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 VAL . A . 1 VAL . 1 2474 1 1 1 1 2 GLN . A . 2 GLN . 1 2474 1 1 1 1 3 ASP . A . 3 ASP . 1 2474 1 1 1 1 4 CYS . A . 4 CYS . 1 2474 1 1 1 1 5 TYR . A . 5 TYR . 1 2474 1 1 1 1 6 HIS . A . 6 HIS c 1 2474 1 1 1 1 7 GLY . A . 7 GLY j 1 2474 1 1 1 1 8 ASP . A . 8 ASP o 1 2474 1 1 1 1 9 GLY . A . 9 GLY l 1 2474 1 1 1 1 10 GLN . A . 10 GLN m 1 2474 1 1 1 1 11 SER . A . 11 SER p 1 2474 1 1 1 1 12 TYR . A . 12 TYR c 1 2474 1 1 1 1 13 ARG . A . 13 ARG c 1 2474 1 1 1 1 14 GLY . A . 14 GLY d 1 2474 1 1 1 1 15 THR . A . 15 THR b 1 2474 1 1 1 1 16 SER . A . 16 SER f 1 2474 1 1 1 1 17 SER . A . 17 SER b 1 2474 1 1 1 1 18 THR . A . 18 THR d 1 2474 1 1 1 1 19 THR . A . 19 THR f 1 2474 1 1 1 1 20 THR . A . 20 THR e 1 2474 1 1 1 1 21 THR . A . 21 THR o 1 2474 1 1 1 1 22 GLY . A . 22 GLY p 1 2474 1 1 1 1 23 LYS . A . 23 LYS a 1 2474 1 1 1 1 24 LYS . A . 24 LYS c 1 2474 1 1 1 1 25 CYS . A . 25 CYS d 1 2474 1 1 1 1 26 GLN . A . 26 GLN d 1 2474 1 1 1 1 27 SER . A . 27 SER f 1 2474 1 1 1 1 28 TRP . A . 28 TRP k 1 2474 1 1 1 1 29 SER . A . 29 SER b 1 2474 1 1 1 1 30 SER . A . 30 SER m 1 2474 1 1 1 1 31 MET . A . 31 MET m 1 2474 1 1 1 1 32 THR . A . 32 THR l 1 2474 1 1 1 1 33 PRO . A . 33 PRO p 1 2474 1 1 1 1 34 HIS . A . 34 HIS c 1 2474 1 1 1 1 35 ARG . A . 35 ARG c 1 2474 1 1 1 1 36 HIS . A . 36 HIS f 1 2474 1 1 1 1 37 GLN . A . 37 GLN b 1 2474 1 1 1 1 38 LYS . A . 38 LYS d 1 2474 1 1 1 1 39 THR . A . 39 THR f 1 2474 1 1 1 1 40 PRO . A . 40 PRO k 1 2474 1 1 1 1 41 GLU . A . 41 GLU l 1 2474 1 1 1 1 42 ASN . A . 42 ASN m 1 2474 1 1 1 1 43 TYR . A . 43 TYR m 1 2474 1 1 1 1 44 PRO . A . 44 PRO m 1 2474 1 1 1 1 45 ASN . A . 45 ASN l 1 2474 1 1 1 1 46 ALA . A . 46 ALA c 1 2474 1 1 1 1 47 GLY . A . 47 GLY c 1 2474 1 1 1 1 48 LEU . A . 48 LEU e 1 2474 1 1 1 1 49 THR . A . 49 THR f 1 2474 1 1 1 1 50 MET . A . 50 MET j 1 2474 1 1 1 1 51 ASN . A . 51 ASN b 1 2474 1 1 1 1 52 TYR . A . 52 TYR c 1 2474 1 1 1 1 53 CYS . A . 53 CYS c 1 2474 1 1 1 1 54 ARG . A . 54 ARG d 1 2474 1 1 1 1 55 ASN . A . 55 ASN f 1 2474 1 1 1 1 56 PRO . A . 56 PRO b 1 2474 1 1 1 1 57 ASP . A . 57 ASP f 1 2474 1 1 1 1 58 ALA . A . 58 ALA c 1 2474 1 1 1 1 59 ASP . A . 59 ASP f 1 2474 1 1 1 1 60 LYS . A . 60 LYS b 1 2474 1 1 1 1 61 GLY . A . 61 GLY d 1 2474 1 1 1 1 62 PRO . A . 62 PRO c 1 2474 1 1 1 1 63 TRP . A . 63 TRP d 1 2474 1 1 1 1 64 CYS . A . 64 CYS d 0 2474 1 1 1 1 65 PHE . A . 65 PHE d 0 2474 1 1 1 1 66 PHE . A . 66 THR f 0 2474 1 1 1 1 67 THR . A . 67 THR b 0 2474 1 1 1 1 68 ASP . A . 68 ASP f 0 2474 1 1 1 1 69 PRO . A . 69 PRO k 1 2474 1 1 1 1 70 SER . A . 70 SER l 1 2474 1 1 1 1 71 VAL . A . 71 VAL m 1 2474 1 1 1 1 72 ARG . A . 72 ARG b 1 2474 1 1 1 1 73 TRP . A . 73 TRP d 1 2474 1 1 1 1 74 GLU . A . 74 GLU c 1 2474 1 1 1 1 75 TYR . A . 75 TYR d 1 2474 1 1 1 1 76 CYS . A . 76 CYS d 1 2474 1 1 1 1 77 ASN . A . 77 ASN d 1 2474 1 1 1 1 78 LEU . A . 78 LEU d 1 2474 1 1 1 1 79 LYS . A . 79 LYS d 1 2474 1 1 1 1 80 LYS . A . 80 LYS . 1 2474 1 1 1 1 81 CYS . A . 81 CYS . 1 2474 1 1 1 1 82 SER . A . 82 SER . 1 2474 1 1 1 1 83 GLY . A . 83 GLY . 1 2474 1 1 1 1 84 THR . A . 84 THR . 1 2474 1 1 1 1 85 GLU . A . 85 GLU . 1 2474 1 1 1 1 86 ALA . A . 86 ALA . 1 2474 1 1 1 1 87 SER . A . 87 SER . 1 2474 1 1 1 1 88 VAL . A . 88 VAL . 1 2474 1 stop_ save_ save_PB_annotation_2 _PB_list.Sf_category PB_list _PB_list.ID 2 _PB_list.Query_ID db1pmk_6723#B _PB_list.Queried_date 2015-01-13 _PB_list.Input_file_name pdb1pmk.ent _PB_list.Output_file_name bmr2474_1pmk_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr2474_1pmk_PB.str _PB_list.AA_seq_one_letter_code CYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKC _PB_list.PB_seq_code zzmnommomcdcfbdfkopacddfkbcklmgcfbdfklommpccdfkdccdfblcfbdcdddfbfkbgbdcdddddzz _PB_list.PDB_ID 1PMK _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_d_res_high 2.25 _PB_list.PDBX_refine_ls_d_res_low 7.0 _PB_list.Entry_ID 2474 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 VAL . B . 1 VAL . 1 2474 2 1 1 1 2 GLN . B . 2 GLN . 1 2474 2 1 1 1 3 ASP . B . 3 ASP . 1 2474 2 1 1 1 4 CYS . B . 4 CYS . 1 2474 2 1 1 1 5 TYR . B . 5 TYR . 1 2474 2 1 1 1 6 HIS . B . 6 HIS m 1 2474 2 1 1 1 7 GLY . B . 7 GLY n 1 2474 2 1 1 1 8 ASP . B . 8 ASP o 1 2474 2 1 1 1 9 GLY . B . 9 GLY m 1 2474 2 1 1 1 10 GLN . B . 10 GLN m 1 2474 2 1 1 1 11 SER . B . 11 SER o 1 2474 2 1 1 1 12 TYR . B . 12 TYR m 1 2474 2 1 1 1 13 ARG . B . 13 ARG c 1 2474 2 1 1 1 14 GLY . B . 14 GLY d 1 2474 2 1 1 1 15 THR . B . 15 THR c 1 2474 2 1 1 1 16 SER . B . 16 SER f 1 2474 2 1 1 1 17 SER . B . 17 SER b 1 2474 2 1 1 1 18 THR . B . 18 THR d 1 2474 2 1 1 1 19 THR . B . 19 THR f 1 2474 2 1 1 1 20 THR . B . 20 THR k 1 2474 2 1 1 1 21 THR . B . 21 THR o 1 2474 2 1 1 1 22 GLY . B . 22 GLY p 1 2474 2 1 1 1 23 LYS . B . 23 LYS a 1 2474 2 1 1 1 24 LYS . B . 24 LYS c 1 2474 2 1 1 1 25 CYS . B . 25 CYS d 1 2474 2 1 1 1 26 GLN . B . 26 GLN d 1 2474 2 1 1 1 27 SER . B . 27 SER f 1 2474 2 1 1 1 28 TRP . B . 28 TRP k 1 2474 2 1 1 1 29 SER . B . 29 SER b 1 2474 2 1 1 1 30 SER . B . 30 SER c 1 2474 2 1 1 1 31 MET . B . 31 MET k 1 2474 2 1 1 1 32 THR . B . 32 THR l 1 2474 2 1 1 1 33 PRO . B . 33 PRO m 1 2474 2 1 1 1 34 HIS . B . 34 HIS g 1 2474 2 1 1 1 35 ARG . B . 35 ARG c 1 2474 2 1 1 1 36 HIS . B . 36 HIS f 1 2474 2 1 1 1 37 GLN . B . 37 GLN b 1 2474 2 1 1 1 38 LYS . B . 38 LYS d 1 2474 2 1 1 1 39 THR . B . 39 THR f 1 2474 2 1 1 1 40 PRO . B . 40 PRO k 1 2474 2 1 1 1 41 GLU . B . 41 GLU l 1 2474 2 1 1 1 42 ASN . B . 42 ASN o 1 2474 2 1 1 1 43 TYR . B . 43 TYR m 1 2474 2 1 1 1 44 PRO . B . 44 PRO m 1 2474 2 1 1 1 45 ASN . B . 45 ASN p 1 2474 2 1 1 1 46 ALA . B . 46 ALA c 1 2474 2 1 1 1 47 GLY . B . 47 GLY c 1 2474 2 1 1 1 48 LEU . B . 48 LEU d 1 2474 2 1 1 1 49 THR . B . 49 THR f 1 2474 2 1 1 1 50 MET . B . 50 MET k 1 2474 2 1 1 1 51 ASN . B . 51 ASN d 1 2474 2 1 1 1 52 TYR . B . 52 TYR c 1 2474 2 1 1 1 53 CYS . B . 53 CYS c 1 2474 2 1 1 1 54 ARG . B . 54 ARG d 1 2474 2 1 1 1 55 ASN . B . 55 ASN f 1 2474 2 1 1 1 56 PRO . B . 56 PRO b 1 2474 2 1 1 1 57 ASP . B . 57 ASP l 1 2474 2 1 1 1 58 ALA . B . 58 ALA c 1 2474 2 1 1 1 59 ASP . B . 59 ASP f 1 2474 2 1 1 1 60 LYS . B . 60 LYS b 1 2474 2 1 1 1 61 GLY . B . 61 GLY d 1 2474 2 1 1 1 62 PRO . B . 62 PRO c 1 2474 2 1 1 1 63 TRP . B . 63 TRP d 1 2474 2 1 1 1 64 CYS . B . 64 CYS d 0 2474 2 1 1 1 65 PHE . B . 65 PHE d 0 2474 2 1 1 1 66 PHE . B . 66 THR f 0 2474 2 1 1 1 67 THR . B . 67 THR b 0 2474 2 1 1 1 68 ASP . B . 68 ASP f 0 2474 2 1 1 1 69 PRO . B . 69 PRO k 1 2474 2 1 1 1 70 SER . B . 70 SER b 1 2474 2 1 1 1 71 VAL . B . 71 VAL g 1 2474 2 1 1 1 72 ARG . B . 72 ARG b 1 2474 2 1 1 1 73 TRP . B . 73 TRP d 1 2474 2 1 1 1 74 GLU . B . 74 GLU c 1 2474 2 1 1 1 75 TYR . B . 75 TYR d 1 2474 2 1 1 1 76 CYS . B . 76 CYS d 1 2474 2 1 1 1 77 ASN . B . 77 ASN d 1 2474 2 1 1 1 78 LEU . B . 78 LEU d 1 2474 2 1 1 1 79 LYS . B . 79 LYS d 1 2474 2 1 1 1 80 LYS . B . 80 LYS . 1 2474 2 1 1 1 81 CYS . B . 81 CYS . 1 2474 2 1 1 1 82 SER . B . 82 SER . 1 2474 2 1 1 1 83 GLY . B . 83 GLY . 1 2474 2 1 1 1 84 THR . B . 84 THR . 1 2474 2 1 1 1 85 GLU . B . 85 GLU . 1 2474 2 1 1 1 86 ALA . B . 86 ALA . 1 2474 2 1 1 1 87 SER . B . 87 SER . 1 2474 2 1 1 1 88 VAL . B . 88 VAL . 1 2474 2 stop_ save_