data_PB ############################# # Protein Blocks Annotation # ############################# ####################################################################################### # PB encoding by Protein Blocks Expert 2.0 server (http://www.bo-protscience.fr/pbe/) # # Reference: Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5. # # : Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. # ####################################################################################### save_PB_annotation_1 _PB_list.Sf_category PB_list _PB_list.ID 1 _PB_list.Query_ID db1jmc_1050#A _PB_list.Queried_date 2014-12-15 _PB_list.Input_file_name pdb1jmc.ent _PB_list.Output_file_name bmr5823_PB.str _PB_list.Electronic_address http://bmrbpub.protein.osaka-u.ac.jp/archive/pb/bmr5823_PB.str _PB_list.AA_seq_one_letter_code KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ _PB_list.PB_seq_code zzdfklgcfklmbdcdddddfbdcdddddddfhbacdddddddddfkbccddddehjlmmmmmmmccehiacddehiadddddfklpcbdcfbdcdddfklccdddddfkgccddddddddfklmmmpcehiacddddddfbacdddddddfknopacdddddddddfkopacddddehjlmmmpccehiiadddehiacdfehhiacdddfkbccdfbacbfklmmmmmmmmmmmzz _PB_list.PDB_ID 1JMC _PB_list.PDBX_exptl_method "X-RAY DIFFRACTION" _PB_list.PDBX_refine_ls_R_factor_R_free 0.33 _PB_list.PDBX_refine_ls_R_factor_R_work 0.1 _PB_list.PDBX_refine_ls_d_res_high 2.400 _PB_list.PDBX_refine_ls_d_res_low 6.000 _PB_list.Entry_ID 5823 loop_ _PB_char.Entity_assembly_ID _PB_char.Assembly_ID _PB_char.Entity_ID _PB_char.Comp_index_ID _PB_char.Comp_ID _PB_char.PDB_model_num _PB_char.PDB_strand_ID _PB_char.PDB_ins_code _PB_char.PDB_residue_no _PB_char.PDB_residue_name _PB_char.PB_code _PB_char.Align _PB_char.Entry_ID _PB_char.PB_list_ID 1 1 1 1 GLN . A . 5 GLN . 1 5823 1 1 1 1 2 SER . A . 6 SER . 1 5823 1 1 1 1 3 LYS . A . 7 LYS . 1 5823 1 1 1 1 4 VAL . A . 8 VAL . 1 5823 1 1 1 1 5 VAL . A . 9 VAL d 1 5823 1 1 1 1 6 PRO . A . 10 PRO f 1 5823 1 1 1 1 7 ILE . A . 11 ILE k 1 5823 1 1 1 1 8 ALA . A . 12 ALA l 1 5823 1 1 1 1 9 SER . A . 13 SER g 1 5823 1 1 1 1 10 LEU . A . 14 LEU c 1 5823 1 1 1 1 11 THR . A . 15 THR f 1 5823 1 1 1 1 12 PRO . A . 16 PRO k 1 5823 1 1 1 1 13 TYR . A . 17 TYR l 1 5823 1 1 1 1 14 GLN . A . 18 GLN m 1 5823 1 1 1 1 15 SER . A . 19 SER b 1 5823 1 1 1 1 16 LYS . A . 20 LYS d 1 5823 1 1 1 1 17 TRP . A . 21 TRP c 1 5823 1 1 1 1 18 THR . A . 22 THR d 1 5823 1 1 1 1 19 ILE . A . 23 ILE d 1 5823 1 1 1 1 20 CYS . A . 24 CYS d 1 5823 1 1 1 1 21 ALA . A . 25 ALA d 1 5823 1 1 1 1 22 ARG . A . 26 ARG d 1 5823 1 1 1 1 23 VAL . A . 27 VAL f 1 5823 1 1 1 1 24 THR . A . 28 THR b 1 5823 1 1 1 1 25 ASN . A . 29 ASN d 1 5823 1 1 1 1 26 LYS . A . 30 LYS c 1 5823 1 1 1 1 27 SER . A . 31 SER d 1 5823 1 1 1 1 28 GLN . A . 32 GLN d 1 5823 1 1 1 1 29 ILE . A . 33 ILE d 1 5823 1 1 1 1 30 ARG . A . 34 ARG d 1 5823 1 1 1 1 31 THR . A . 35 THR d 1 5823 1 1 1 1 32 TRP . A . 36 TRP d 1 5823 1 1 1 1 33 SER . A . 37 SER d 1 5823 1 1 1 1 34 ASN . A . 38 ASN f 1 5823 1 1 1 1 35 SER . A . 39 SER h 1 5823 1 1 1 1 36 ARG . A . 40 ARG b 1 5823 1 1 1 1 37 GLY . A . 41 GLY a 1 5823 1 1 1 1 38 GLU . A . 42 GLU c 1 5823 1 1 1 1 39 GLY . A . 43 GLY d 1 5823 1 1 1 1 40 LYS . A . 44 LYS d 1 5823 1 1 1 1 41 LEU . A . 45 LEU d 1 5823 1 1 1 1 42 PHE . A . 46 PHE d 1 5823 1 1 1 1 43 SER . A . 47 SER d 1 5823 1 1 1 1 44 LEU . A . 48 LEU d 1 5823 1 1 1 1 45 GLU . A . 49 GLU d 1 5823 1 1 1 1 46 LEU . A . 50 LEU d 1 5823 1 1 1 1 47 VAL . A . 51 VAL d 1 5823 1 1 1 1 48 ASP . A . 52 ASP f 1 5823 1 1 1 1 49 GLU . A . 53 GLU k 1 5823 1 1 1 1 50 SER . A . 54 SER b 1 5823 1 1 1 1 51 GLY . A . 55 GLY c 1 5823 1 1 1 1 52 GLU . A . 56 GLU c 1 5823 1 1 1 1 53 ILE . A . 57 ILE d 1 5823 1 1 1 1 54 ARG . A . 58 ARG d 1 5823 1 1 1 1 55 ALA . A . 59 ALA d 1 5823 1 1 1 1 56 THR . A . 60 THR d 1 5823 1 1 1 1 57 ALA . A . 61 ALA e 1 5823 1 1 1 1 58 PHE . A . 62 PHE h 1 5823 1 1 1 1 59 ASN . A . 63 ASN j 1 5823 1 1 1 1 60 GLU . A . 64 GLU l 1 5823 1 1 1 1 61 GLN . A . 65 GLN m 1 5823 1 1 1 1 62 VAL . A . 66 VAL m 1 5823 1 1 1 1 63 ASP . A . 67 ASP m 1 5823 1 1 1 1 64 LYS . A . 68 LYS m 1 5823 1 1 1 1 65 PHE . A . 69 PHE m 1 5823 1 1 1 1 66 PHE . A . 70 PHE m 1 5823 1 1 1 1 67 PRO . A . 71 PRO m 1 5823 1 1 1 1 68 LEU . A . 72 LEU c 1 5823 1 1 1 1 69 ILE . A . 73 ILE c 1 5823 1 1 1 1 70 GLU . A . 74 GLU e 1 5823 1 1 1 1 71 VAL . A . 75 VAL h 1 5823 1 1 1 1 72 ASN . A . 76 ASN i 1 5823 1 1 1 1 73 LYS . A . 77 LYS a 1 5823 1 1 1 1 74 VAL . A . 78 VAL c 1 5823 1 1 1 1 75 TYR . A . 79 TYR d 1 5823 1 1 1 1 76 TYR . A . 80 TYR d 1 5823 1 1 1 1 77 PHE . A . 81 PHE e 1 5823 1 1 1 1 78 SER . A . 82 SER h 1 5823 1 1 1 1 79 LYS . A . 83 LYS i 1 5823 1 1 1 1 80 GLY . A . 84 GLY a 1 5823 1 1 1 1 81 THR . A . 85 THR d 1 5823 1 1 1 1 82 LEU . A . 86 LEU d 1 5823 1 1 1 1 83 LYS . A . 87 LYS d 1 5823 1 1 1 1 84 ILE . A . 88 ILE d 1 5823 1 1 1 1 85 ALA . A . 89 ALA d 1 5823 1 1 1 1 86 ASN . A . 90 ASN f 1 5823 1 1 1 1 87 LYS . A . 91 LYS k 1 5823 1 1 1 1 88 GLN . A . 92 GLN l 1 5823 1 1 1 1 89 PHE . A . 93 PHE p 1 5823 1 1 1 1 90 THR . A . 94 THR c 1 5823 1 1 1 1 91 ALA . A . 95 ALA b 1 5823 1 1 1 1 92 VAL . A . 96 VAL d 1 5823 1 1 1 1 93 LYS . A . 97 LYS c 1 5823 1 1 1 1 94 ASN . A . 98 ASN f 1 5823 1 1 1 1 95 ASP . A . 99 ASP b 1 5823 1 1 1 1 96 TYR . A . 100 TYR d 1 5823 1 1 1 1 97 GLU . A . 101 GLU c 1 5823 1 1 1 1 98 MET . A . 102 MET d 1 5823 1 1 1 1 99 THR . A . 103 THR d 1 5823 1 1 1 1 100 PHE . A . 104 PHE d 1 5823 1 1 1 1 101 ASN . A . 105 ASN f 1 5823 1 1 1 1 102 ASN . A . 106 ASN k 1 5823 1 1 1 1 103 GLU . A . 107 GLU l 1 5823 1 1 1 1 104 THR . A . 108 THR c 1 5823 1 1 1 1 105 SER . A . 109 SER c 1 5823 1 1 1 1 106 VAL . A . 110 VAL d 1 5823 1 1 1 1 107 MET . A . 111 MET d 1 5823 1 1 1 1 108 PRO . A . 112 PRO d 1 5823 1 1 1 1 109 CYS . A . 113 CYS d 1 5823 1 1 1 1 110 GLU . A . 114 GLU d 1 5823 1 1 1 1 111 ASP . A . 115 ASP f 1 5823 1 1 1 1 112 ASP . A . 116 ASP k 1 5823 1 1 1 1 113 HIS . A . 117 HIS g 1 5823 1 1 1 1 114 HIS . A . 118 HIS c 1 5823 1 1 1 1 115 LEU . A . 119 LEU c 1 5823 1 1 1 1 116 PRO . A . 120 PRO d 1 5823 1 1 1 1 117 THR . A . 121 THR d 1 5823 1 1 1 1 118 VAL . A . 122 VAL d 1 5823 1 1 1 1 119 GLN . A . 123 GLN d 1 5823 1 1 1 1 120 PHE . A . 124 PHE d 1 5823 1 1 1 1 121 ASP . A . 125 ASP d 1 5823 1 1 1 1 122 PHE . A . 126 PHE d 1 5823 1 1 1 1 123 THR . A . 127 THR d 1 5823 1 1 1 1 124 GLY . A . 128 GLY f 1 5823 1 1 1 1 125 ILE . A . 129 ILE k 1 5823 1 1 1 1 126 ASP . A . 130 ASP l 1 5823 1 1 1 1 127 ASP . A . 131 ASP m 1 5823 1 1 1 1 128 LEU . A . 132 LEU m 1 5823 1 1 1 1 129 GLU . A . 133 GLU m 1 5823 1 1 1 1 130 ASN . A . 134 ASN p 1 5823 1 1 1 1 131 LYS . A . 135 LYS c 1 5823 1 1 1 1 132 SER . A . 136 SER e 1 5823 1 1 1 1 133 LYS . A . 137 LYS h 1 5823 1 1 1 1 134 ASP . A . 138 ASP i 1 5823 1 1 1 1 135 SER . A . 139 SER a 1 5823 1 1 1 1 136 LEU . A . 140 LEU c 1 5823 1 1 1 1 137 VAL . A . 141 VAL d 1 5823 1 1 1 1 138 ASP . A . 142 ASP d 1 5823 1 1 1 1 139 ILE . A . 143 ILE d 1 5823 1 1 1 1 140 ILE . A . 144 ILE d 1 5823 1 1 1 1 141 GLY . A . 145 GLY d 1 5823 1 1 1 1 142 ILE . A . 146 ILE d 1 5823 1 1 1 1 143 CYS . A . 147 CYS f 1 5823 1 1 1 1 144 LYS . A . 148 LYS b 1 5823 1 1 1 1 145 SER . A . 149 SER a 1 5823 1 1 1 1 146 TYR . A . 150 TYR c 1 5823 1 1 1 1 147 GLU . A . 151 GLU d 1 5823 1 1 1 1 148 ASP . A . 152 ASP d 1 5823 1 1 1 1 149 ALA . A . 153 ALA d 1 5823 1 1 1 1 150 THR . A . 154 THR d 1 5823 1 1 1 1 151 LYS . A . 155 LYS d 1 5823 1 1 1 1 152 ILE . A . 156 ILE d 1 5823 1 1 1 1 153 THR . A . 157 THR d 1 5823 1 1 1 1 154 VAL . A . 158 VAL f 1 5823 1 1 1 1 155 ARG . A . 159 ARG k 1 5823 1 1 1 1 156 SER . A . 160 SER n 1 5823 1 1 1 1 157 ASN . A . 161 ASN o 1 5823 1 1 1 1 158 ASN . A . 162 ASN p 1 5823 1 1 1 1 159 ARG . A . 163 ARG a 1 5823 1 1 1 1 160 GLU . A . 164 GLU c 1 5823 1 1 1 1 161 VAL . A . 165 VAL d 1 5823 1 1 1 1 162 ALA . A . 166 ALA d 1 5823 1 1 1 1 163 LYS . A . 167 LYS d 1 5823 1 1 1 1 164 ARG . A . 168 ARG d 1 5823 1 1 1 1 165 ASN . A . 169 ASN d 1 5823 1 1 1 1 166 ILE . A . 170 ILE d 1 5823 1 1 1 1 167 TYR . A . 171 TYR d 1 5823 1 1 1 1 168 LEU . A . 172 LEU d 1 5823 1 1 1 1 169 MET . A . 173 MET d 1 5823 1 1 1 1 170 ASP . A . 174 ASP f 1 5823 1 1 1 1 171 THR . A . 175 THR k 1 5823 1 1 1 1 172 SER . A . 176 SER o 1 5823 1 1 1 1 173 GLY . A . 177 GLY p 1 5823 1 1 1 1 174 LYS . A . 178 LYS a 1 5823 1 1 1 1 175 VAL . A . 179 VAL c 1 5823 1 1 1 1 176 VAL . A . 180 VAL d 1 5823 1 1 1 1 177 THR . A . 181 THR d 1 5823 1 1 1 1 178 ALA . A . 182 ALA d 1 5823 1 1 1 1 179 THR . A . 183 THR d 1 5823 1 1 1 1 180 LEU . A . 184 LEU e 1 5823 1 1 1 1 181 TRP . A . 185 TRP h 1 5823 1 1 1 1 182 GLY . A . 186 GLY j 1 5823 1 1 1 1 183 GLU . A . 187 GLU l 1 5823 1 1 1 1 184 ASP . A . 188 ASP m 1 5823 1 1 1 1 185 ALA . A . 189 ALA m 1 5823 1 1 1 1 186 ASP . A . 190 ASP m 1 5823 1 1 1 1 187 LYS . A . 191 LYS p 1 5823 1 1 1 1 188 PHE . A . 192 PHE c 1 5823 1 1 1 1 189 ASP . A . 193 ASP c 1 5823 1 1 1 1 190 GLY . A . 194 GLY e 1 5823 1 1 1 1 191 SER . A . 195 SER h 1 5823 1 1 1 1 192 ARG . A . 196 ARG i 1 5823 1 1 1 1 193 GLN . A . 197 GLN i 1 5823 1 1 1 1 194 PRO . A . 198 PRO a 1 5823 1 1 1 1 195 VAL . A . 199 VAL d 1 5823 1 1 1 1 196 LEU . A . 200 LEU d 1 5823 1 1 1 1 197 ALA . A . 201 ALA d 1 5823 1 1 1 1 198 ILE . A . 202 ILE e 1 5823 1 1 1 1 199 LYS . A . 203 LYS h 1 5823 1 1 1 1 200 GLY . A . 204 GLY i 1 5823 1 1 1 1 201 ALA . A . 205 ALA a 1 5823 1 1 1 1 202 ARG . A . 206 ARG c 1 5823 1 1 1 1 203 VAL . A . 207 VAL d 1 5823 1 1 1 1 204 SER . A . 208 SER f 1 5823 1 1 1 1 205 ASP . A . 209 ASP e 1 5823 1 1 1 1 206 PHE . A . 210 PHE h 1 5823 1 1 1 1 207 GLY . A . 211 GLY h 1 5823 1 1 1 1 208 GLY . A . 212 GLY i 1 5823 1 1 1 1 209 ARG . A . 213 ARG a 1 5823 1 1 1 1 210 SER . A . 214 SER c 1 5823 1 1 1 1 211 LEU . A . 215 LEU d 1 5823 1 1 1 1 212 SER . A . 216 SER d 1 5823 1 1 1 1 213 VAL . A . 217 VAL d 1 5823 1 1 1 1 214 LEU . A . 218 LEU f 1 5823 1 1 1 1 215 SER . A . 219 SER k 1 5823 1 1 1 1 216 SER . A . 220 SER b 1 5823 1 1 1 1 217 SER . A . 221 SER c 1 5823 1 1 1 1 218 THR . A . 222 THR c 1 5823 1 1 1 1 219 ILE . A . 223 ILE d 1 5823 1 1 1 1 220 ILE . A . 224 ILE f 1 5823 1 1 1 1 221 ALA . A . 225 ALA b 1 5823 1 1 1 1 222 ASN . A . 226 ASN a 1 5823 1 1 1 1 223 PRO . A . 227 PRO c 1 5823 1 1 1 1 224 ASP . A . 228 ASP b 1 5823 1 1 1 1 225 ILE . A . 229 ILE f 1 5823 1 1 1 1 226 PRO . A . 230 PRO k 1 5823 1 1 1 1 227 GLU . A . 231 GLU l 1 5823 1 1 1 1 228 ALA . A . 232 ALA m 1 5823 1 1 1 1 229 TYR . A . 233 TYR m 1 5823 1 1 1 1 230 LYS . A . 234 LYS m 1 5823 1 1 1 1 231 LEU . A . 235 LEU m 1 5823 1 1 1 1 232 ARG . A . 236 ARG m 1 5823 1 1 1 1 233 GLY . A . 237 GLY m 1 5823 1 1 1 1 234 TRP . A . 238 TRP m 1 5823 1 1 1 1 235 PHE . A . 239 PHE m 1 5823 1 1 1 1 236 ASP . A . 240 ASP m 1 5823 1 1 1 1 237 ALA . A . 241 ALA m 1 5823 1 1 1 1 238 GLU . A . 242 GLU m 1 5823 1 1 1 1 239 GLY . A . 243 GLY . 1 5823 1 1 1 1 240 GLN . A . 244 GLN . 1 5823 1 1 1 1 241 ALA . A . 245 ALA . 1 5823 1 1 1 1 242 LEU . A . 246 LEU . 1 5823 1 stop_ save_